Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00514 ATGGGTTATGAAAAGAATAGAGCTTTGGGAGCTTTTACTGATGGGGAATGGGATTCTTTCACTGCCATCTTCTCATCCCTTCAAGAACTCGATCAATCCCTCATCCCCACTGAGCTTCCATTGCCCAACAATGGCGCCTCTGAGCTTCCTAATAATACCTGGTTCTATTCCTTGGACGCTTTTGATCCCAATTTCCAGAGCTCTGTTCAACAGGACATGAGCTGTAGTAGCTGCACCCCTGTTTGGATTGACCAAGTACAAAACTGTCTCGCCGCCACCGCTGAAGCTTGCGACCATGGCAGCCAGCCGCCGCAGCTTGTCGATGGAAATGAACCGATTGCGATGAAAAGAAAAGACAAAAACAGAGAGCTTTCTTCTAATCAGAAGAAGAAAACTCGAATCTCCGACAAAAACAGAGAGCTTTCTTCTAATCAGAAGAAGAAAACTCGAATCTCCGGCGATGGGCAAAAGAAGAAAACCCAGAAGAAAACAGAGGAAATAGTTGAGGATGCAGGGGTATCAGAAGGACAGAGCTCGAGTTCAGAAGAGGAGGGTCACGGCGGCTCAGCCACCACCTCCGACGGCGGCATGAACGGAAAAAGCAGAGCTAGCAGAGGGTCGGCCACGGATCCACAAAGCCTGTACGCCAGAAAACGACGAGAGAGAATTAATGAGCGTTTAAAAATGTTACAGAAACTCGTTCCCAATGGAACCAAGGTTGATATCAGCACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTCTTGCAGCTCCAAATCAAGGGGCAAAAGAAGAAAACCCAGAAGAAAACAGAGGAAATAGTTGAGGATGCAGGGGTATCAGAAGGACAGAGCTCGAGTTCAGAAGAGGAGGGTCACGGCGGCTCAGCCACCACCTCCGACGGCGGCATGAACGGAAAAAGCAGAGCTAGCAGAGGGTCGGCCACGGATCCACAAAGCCTGTACGCCAGAAAACGACGAGAGAGAATTAATGAGCGTTTAAAAATGTTACAGAAACTCGTTCCCAATGGAACCAAGGTTGATATCAGCACCATGCTTGAAGAAGCAGTTCATTATGTC 1080 47.96 MGYEKNRALGAFTDGEWDSFTAIFSSLQELDQSLIPTELPLPNNGASELPNNTWFYSLDAFDPNFQSSVQQDMSCSSCTPVWIDQVQNCLAATAEACDHGSQPPQLVDGNEPIAMKRKDKNRELSSNQKKKTRISDKNRELSSNQKKKTRISGDGQKKKTQKKTEEIVEDAGVSEGQSSSSEEEGHGGSATTSDGGMNGKSRASRGSATDPQSLYARKRRERINERLKMLQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKGQKKKTQKKTEEIVEDAGVSEGQSSSSEEEGHGGSATTSDGGMNGKSRASRGSATDPQSLYARKRRERINERLKMLQKLVPNGTKVDISTMLEEAVHYV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3391186 3396796 + Cp4.1LG07g04890.1 Cpe07g00514 472321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00514 360 Gene3D - 316 360 IPR036638 GO:0046983
Cpe07g00514 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 267 IPR036638 GO:0046983
Cpe07g00514 360 MobiDBLite consensus disorder prediction 112 170 - -
Cpe07g00514 360 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 266 360 - -
Cpe07g00514 360 CDD bHLH_AtIND_like 208 260 - -
Cpe07g00514 360 PANTHER TRANSCRIPTION FACTOR BHLH54 115 261 - -
Cpe07g00514 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 360 IPR036638 GO:0046983
Cpe07g00514 360 Gene3D - 206 268 IPR036638 GO:0046983
Cpe07g00514 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 256 IPR011598 GO:0046983
Cpe07g00514 360 MobiDBLite consensus disorder prediction 261 328 - -
Cpe07g00514 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 360 IPR011598 GO:0046983
Cpe07g00514 360 PANTHER TRANSCRIPTION FACTOR BHLH54 266 360 - -
Cpe07g00514 360 SMART finulus 320 360 IPR011598 GO:0046983
Cpe07g00514 360 SMART finulus 213 262 IPR011598 GO:0046983
Cpe07g00514 360 Pfam Helix-loop-helix DNA-binding domain 324 359 IPR011598 GO:0046983
Cpe07g00514 360 Pfam Helix-loop-helix DNA-binding domain 217 257 IPR011598 GO:0046983
Cpe07g00514 360 MobiDBLite consensus disorder prediction 280 318 - -
Cpe07g00514 360 MobiDBLite consensus disorder prediction 173 211 - -
Cpe07g00514 360 MobiDBLite consensus disorder prediction 97 221 - -
Cpe07g00514 360 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 115 261 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00514 Cpe11g00124 CCT
Cpe07g00514 Cpe11g00124 ECH
Cpe06g00195 Cpe07g00514 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00514 Cpe-Chr7:3391186 Cpe14g00269 Cpe-Chr14:1556221 1.22E-29 dispersed
Cpe01g00404 Cpe-Chr1:2341237 Cpe07g00514 Cpe-Chr7:3391186 2.25E-27 wgd
Cpe11g00124 Cpe-Chr11:681069 Cpe07g00514 Cpe-Chr7:3391186 3.58E-31 wgd
Cpe15g00442 Cpe-Chr15:5543153 Cpe07g00514 Cpe-Chr7:3391186 2.71E-11 wgd
Cpe04g00326 Cpe-Chr4:4005182 Cpe07g00514 Cpe-Chr7:3391186 8.85E-26 wgd
Cpe06g00195 Cpe-Chr6:1046524 Cpe07g00514 Cpe-Chr7:3391186 6.32E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49753 PF00010 HLH 6.30E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00514 - - cpep:111785098 439.113