Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00517 ATGTGGAAGGATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTTGCTAATCGTGTTAAATCCGATCGAGTCAGCAGTCTGCAACTTTCCAATCATAAGGACATTGTCTCTCCCCATCGAGGTTCCGTCAACTCACTTCAGGTTGATTTGACGGAGGGGAGATATTTGTTATCTGGAGCATCAGATGCATCGGCTGCTGTTTTTGATATTCAACGTGCATCTCATTCTGAGGGTCTTATTGCAAAATACCAATGCCTTTTTGCAGTTGATAAGCAGCATGAACATGGACATAAATATGCAATTTCCTCGGCCATATGGTATCCCATTGATACTGGATTGTTTGTCACAGGTTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAACTTTAAATTGCCTGGAAAAGTCTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACGGAAGATGTTCAAGTCCGCCTTTGTGATATTTCATCGGGAGCATTTTCTCACACCTTATCTGGACATCGTGCAATTGCAGTCCGTAGTTTTAATCAATTTGTGGAAGATGTCAATACCTATGGTGTAATGAGTGTAGAATGGTCAGCTTCTAGCGAGTGGGTTTTGATTACTGGCGGATGTGATGGAGCAATTCGTTTTTGGGACATCAGACGAGCTGGATGTTTTCGTGTTCTAGATCAGTCTCAATCCCAGCTCGGGCGACGTCCACCTATTTCAGGATGGACTGCAAATAAGCTATCAACATCTAAGTCCCACTTGGCCAGCCAAGGTTCAAATATGAAATCTCGCATACTTCATAAGAAACTAGCCAATGGAAACGCAACAAAGCCATCATCTACTACAGGTAAACTGCCAGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTGTCCAGCCAGGATCGAGCAGTTTCTCACTACGGTGCTGTTACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTGTGGGATGTCGAATCCGGGTGTAATACGCTCGTGAATTATGAAACCGTGAGGTTACATACCAATAAGCCGTTGCAATTAGCCACATCTCAAGACTCAGCCCTTGTATTTGCTCCATGCATGGCAAATATTAAAGCATTTGATATGTGGACAGGGAAGGCATCCCTGACGCTCAGCGGCCATTACGAAGCTGTGAACTGTTGCTTGTATAGTTTCCAGGATCAGGAACTGTACACTGGTGGCAACGATAGGCAAATTCTCGTCTGGTCACCATCCCGGGACTCTACCGAACTGGATTGGGAATCCAGTGCAGACAAAGATAACTGGAGCGACTGA 1392 44.76 MWKDIRDREAGKLRPNSFANRVKSDRVSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRASHSEGLIAKYQCLFAVDKQHEHGHKYAISSAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRAIAVRSFNQFVEDVNTYGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSHLASQGSNMKSRILHKKLANGNATKPSSTTGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETVRLHTNKPLQLATSQDSALVFAPCMANIKAFDMWTGKASLTLSGHYEAVNCCLYSFQDQELYTGGNDRQILVWSPSRDSTELDWESSADKDNWSD 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3414466 3419777 - Cp4.1LG07g04820.1 Cpe07g00517 472324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00517 463 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Cpe07g00517 463 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Cpe07g00517 463 PRINTS G protein beta WD-40 repeat signature 117 131 IPR020472 -
Cpe07g00517 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 442 IPR001680 GO:0005515
Cpe07g00517 463 SUPERFAMILY WD40 repeat-like 38 442 IPR036322 GO:0005515
Cpe07g00517 463 Pfam WD domain, G-beta repeat 181 233 IPR001680 GO:0005515
Cpe07g00517 463 Pfam WD domain, G-beta repeat 325 355 IPR001680 GO:0005515
Cpe07g00517 463 Pfam WD domain, G-beta repeat 407 442 IPR001680 GO:0005515
Cpe07g00517 463 Pfam WD domain, G-beta repeat 98 130 IPR001680 GO:0005515
Cpe07g00517 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 139 IPR001680 GO:0005515
Cpe07g00517 463 Gene3D - 315 451 IPR015943 GO:0005515
Cpe07g00517 463 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 133 - -
Cpe07g00517 463 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 463 IPR042238 GO:0006283
Cpe07g00517 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Cpe07g00517 463 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 359 - -
Cpe07g00517 463 ProSitePatterns Trp-Asp (WD) repeats signature. 220 234 IPR019775 -
Cpe07g00517 463 ProSitePatterns Trp-Asp (WD) repeats signature. 342 356 IPR019775 -
Cpe07g00517 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 364 IPR001680 GO:0005515
Cpe07g00517 463 MobiDBLite consensus disorder prediction 287 312 - -
Cpe07g00517 463 MobiDBLite consensus disorder prediction 290 305 - -
Cpe07g00517 463 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 410 442 - -
Cpe07g00517 463 SMART WD40_4 177 233 IPR001680 GO:0005515
Cpe07g00517 463 SMART WD40_4 317 355 IPR001680 GO:0005515
Cpe07g00517 463 SMART WD40_4 32 72 IPR001680 GO:0005515
Cpe07g00517 463 SMART WD40_4 85 130 IPR001680 GO:0005515
Cpe07g00517 463 SMART WD40_4 403 442 IPR001680 GO:0005515
Cpe07g00517 463 Gene3D - 1 313 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00517 K10570 ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8 - csv:101209203 847.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00517 Cpe-Chr7:3414466 Cpe03g00852 Cpe-Chr3:5351688 7.52E-10 dispersed
Cpe07g00517 Cpe-Chr7:3414466 Cpe20g00414 Cpe-Chr20:2366880 9.91E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00517 Cpe_Chr07 FPKM 358.23764 350.164276 189.543045 173.381531 271.478485 362.595428 275.588318 370.428833 443.985077 345.922791