Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00519 ATGGCCATTGAAATCGAGATAGATTTGCTCTTCCCTCACGCACAGGAAAACCTCAGTTTGTCACGCAAAGCTGCAAACATGGCGAATCTTAGCTCCGAATTCGATGAGATGGGTTCCTTCACCTTCACTGACTTTCCTGAAGATGTTCAGTTATGTATTCTCTCCTTCCTCTCTCCCTCCGATGTAGTCACTTTCTCTTGTACATCGAAGAGAGTCGTCTCGCTCTGTAGGAATGATCGGAAACTGTGGTTTACGATGTGCGATCGGAGATGGGGATCCAAAACTCAGATCAAGAATTGGGGAAAAGGAAACATTACTTACAGGTTACTCTATAGAACTCTTCTTCAATGGGAGAATCTATTAGGTTTTTGGCGCCGGAGTGGCTCGTCTAGCGTATCATCGCCGCCGCTGGTGTTCTTCGAATGGTGCTCGGATTTTCTCGCTGGATTTAGGGTTTCTCCATCGAGTAACGGTACTTACGATGTGGTTAAGTCTCCATTTCTATGGCTGGGGCTCTCTTCAGAAGGTAAGGCCATGGGTTTTATTGACCCCAAGGGCTGTTCAGACTTCGCCGGGAAATTTTCGGATTTGGGAGAATCCGATTTCTCCGATTGCGATTTGGTTCCCGTCGATTTGAGCTTCATGGGGAAAAATCATTTTGTCATCGAGGAAAATCAGACGTTTGTTTATCCGAATTCCCCAGAACAAAGGAAAAAGGGATTCCGCCGGAGTTCAAGTTTCGCCAATTTGGCCGCCGCAACTGATGTGAACGAAGTGGCAAGTGGCTCTCCCGGAAGCTTACCGGACCAATTAATGTCAGAAATTTATCAGCATTTTGCGAATAGAACCAGTCCTGGAGCCTCAAGGAGGCAAAGGAGGAGGGAGAAGGAAAGACTAGGAAAGAAGAAATGGGAACCAGAGCATTTCGTTAAAATTGTCAATTGCTCGCCCACACCATTGCGGCCATTACAGGGCTTGTGGAAGGGAATCAGTGATGATATGAGCATGGATTTCTATCTTGTTGTATATGATGACATTGGTGGCATTTCTTGTCGGAGGGTTAGGGACTCGTCCGAACGTTTCTCTAGTAATGCTCCCGTGTTTTGGACATCGAATACTACGTTCTTGGAAACTCCATTCTCCCTTGAGGAAGAACTTTTATATGACTGTCGAATACATGTTCGGCCTCTACCAGCCAATGACATTGAAGAGCTAGTGCCTTCAATAGAAAACAAAAAGATTTCTCGCATCCTTTGCGTGAACTCGAGTTATGATCTAGTCTTACCGGACCTGGCTGGAAGTATTCCAAATCCTCGTAATGTCGAGGGAAGAATTTGGCAATACAATAATGGAACTTTTGGGTTCGGTTTCCTTAGGGATAACTTTATTATAGACCTGAAGCATATTGCTCGAAATGGTTTAATTCTGGATACTGAACAGAAAGAAAGAATGGAGATGGCATTTGCTGTAAAGGAAGGATGGGAACCAGAGGGGCCATAA 1500 45.07 MAIEIEIDLLFPHAQENLSLSRKAANMANLSSEFDEMGSFTFTDFPEDVQLCILSFLSPSDVVTFSCTSKRVVSLCRNDRKLWFTMCDRRWGSKTQIKNWGKGNITYRLLYRTLLQWENLLGFWRRSGSSSVSSPPLVFFEWCSDFLAGFRVSPSSNGTYDVVKSPFLWLGLSSEGKAMGFIDPKGCSDFAGKFSDLGESDFSDCDLVPVDLSFMGKNHFVIEENQTFVYPNSPEQRKKGFRRSSSFANLAAATDVNEVASGSPGSLPDQLMSEIYQHFANRTSPGASRRQRRREKERLGKKKWEPEHFVKIVNCSPTPLRPLQGLWKGISDDMSMDFYLVVYDDIGGISCRRVRDSSERFSSNAPVFWTSNTTFLETPFSLEEELLYDCRIHVRPLPANDIEELVPSIENKKISRILCVNSSYDLVLPDLAGSIPNPRNVEGRIWQYNNGTFGFGFLRDNFIIDLKHIARNGLILDTEQKERMEMAFAVKEGWEPEGP 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3426371 3432460 - Cp4.1LG07g04840.1 Cpe07g00519 472326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00519 499 ProSiteProfiles F-box domain profile. 39 86 IPR001810 GO:0005515
Cpe07g00519 499 SMART fbox_2 45 86 IPR001810 GO:0005515
Cpe07g00519 499 Gene3D - 28 119 - -
Cpe07g00519 499 Pfam F-box domain 43 81 IPR001810 GO:0005515
Cpe07g00519 499 SUPERFAMILY F-box domain 35 117 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00519 - - - csv:101209938 775.007
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00519 Cpe11g00114 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00519 Cpe-Chr7:3426371 Cpe11g00114 Cpe-Chr11:637565 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g642 . . . . . . . . . Cmo12g00542 . . . Car12g00546 Sed10g1169 . Cpe07g00519 Bhi04g00437 Tan02g1723 Cmetu03g0234 . Hepe08g1340 . Lcy13g2138 Cla08g01628 Cam08g2132 Cec08g1717 Cco08g1839 Clacu08g1818 . Cre08g1601 . . . Cone20ag0236 . . . Cme03g02109 . . . Bda01g01626 . . . . . . . Cma12g00602 Cma05g00133 . . Cpe11g00114 . . . . . . . . . . . . . . . Lsi08g01533 Csa02g01887 Chy03g01599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010550 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00519 Cpe_Chr07 FPKM 10.297256 0.0 0.0 0.0 0.0 0.0 0.0 9.959067 13.345078 12.324826