Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00525 ATGCCGATGTACCAGCCTTCTACTTGGAGAGAAGGGGATCCCAAGCTTGTAGTAGCTTGCGGAGCGCAGATTCTAGATCTGGAAACTGTCGTCAAAGATGGGATTCTCGGCGGCGGTGGCGGCGTTGGCGGTGGCGGTGGCGGTGGGGAGAAGTTAGATCTGAAGGAGATGATTGAGGTGCTGGAATCGTCGATAGAGGTCCCATCGGTGTTCATTTGCCCAATTTCTCTCGAGCCAATGCAAGACCCGGTGACACTCTGTTCTGGGCAGACCTACGAGCGGTGCAACATTCAGAAATGGTTCTCTTTAGGCCATTTGACTTGCCCCACAACAATGCAAGAGCTTTGGGACGATTCCCTTACACCCAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTCGCAGAAGTTCTTGGCGTTCAAGAAGAAATCAGAGGACGTTCAGGGGAGAGTAACAGAGCTTTTGGATTCATTGAAGAAGGTCAAGGGTCAAGCTAGAGTTCAGTCCCTGAAAGATCTCCGGCATGTCGTCGCCGCCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGCGTCGCTGTAATCTCTTCCCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCGGAAGCCGTGGGGATTCTCGTAAATTTGGATCTCGATTCGGAGTTAAAGAACAATTTGATTCAACCCACGAGAATATCACTAATTGCAGATATTTTAAACGAAGGCTCCATCGAAACCAAGATCAATTGCACGAAATTCATCAAGAAATTAACGGACGGTGACGATTCAAGAACAGAGAGCGTTTCAAGTTTGAGCTTACTCGTGGGATTGTTAAGAATGGTGAAGGATCAAAAACACCCAAATGGAGTAACCGCCGGACTTAGTTTACTCCGATCACTCTGTTCAAACGAATCCATAAAAAAGCAACTGGTAAGCATCGGCGCCGTCGCGAAACTCGGCGGTGCTCTGTCCAGTTTCAACGGCGATGGGTTGGAATCAGCGCTTTACATTCTCGAGGTTTTGTCGTCTCTTCCAGAGGGAAGATTAGCGTTGAAAGATTGTGAAGAAACGATTAAGAAGTTGGTGAAATTGTTGATGAAAGTATCTGAGATTTGTACTGAATTTGCGTTGTCAATTTTATGGGCGGTTTTCAAGGTGGCGCCGGAGGAATGCGCGGTGGTTGCGGTGGATGCAGGATTGGCGGCGAAGTTGCTGCTTGTGATACAAAGTGGGTGCAATAAAGAGGATTATTTGTTACTATGA 1275 48.31 MPMYQPSTWREGDPKLVVACGAQILDLETVVKDGILGGGGGVGGGGGGGEKLDLKEMIEVLESSIEVPSVFICPISLEPMQDPVTLCSGQTYERCNIQKWFSLGHLTCPTTMQELWDDSLTPNRTLHQLIHTWFSQKFLAFKKKSEDVQGRVTELLDSLKKVKGQARVQSLKDLRHVVAAHSSAKKMVVDNGGVAVISSLLGSFTSHAVGSEAVGILVNLDLDSELKNNLIQPTRISLIADILNEGSIETKINCTKFIKKLTDGDDSRTESVSSLSLLVGLLRMVKDQKHPNGVTAGLSLLRSLCSNESIKKQLVSIGAVAKLGGALSSFNGDGLESALYILEVLSSLPEGRLALKDCEETIKKLVKLLMKVSEICTEFALSILWAVFKVAPEECAVVAVDAGLAAKLLLVIQSGCNKEDYLLL 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3466551 3469048 + Cp4.1LG07g04880.1 Cpe07g00525 472332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00525 424 Pfam U-box domain 67 137 IPR003613 GO:0004842|GO:0016567
Cpe07g00525 424 CDD RING-Ubox_PUB 71 113 IPR045210 -
Cpe07g00525 424 SUPERFAMILY RING/U-box 64 137 - -
Cpe07g00525 424 SUPERFAMILY ARM repeat 148 412 IPR016024 -
Cpe07g00525 424 SMART Ubox_2 70 133 IPR003613 GO:0004842|GO:0016567
Cpe07g00525 424 Gene3D - 139 423 IPR011989 -
Cpe07g00525 424 PANTHER WDSAM1 PROTEIN 38 418 IPR045185 GO:0061630
Cpe07g00525 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 138 IPR013083 -
Cpe07g00525 424 ProSiteProfiles U-box domain profile. 66 140 IPR003613 GO:0004842|GO:0016567
Cpe07g00525 424 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 38 418 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00230 Cpe07g00525 CCT
Cpe07g00525 Cpe11g00111 CCT
Cpe06g00211 Cpe07g00525 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00525 Cpe-Chr7:3466551 Cpe01g00435 Cpe-Chr1:2508832 7.82E-39 dispersed
Cpe11g00111 Cpe-Chr11:627309 Cpe07g00525 Cpe-Chr7:3466551 0 wgd
Cpe02g00230 Cpe-Chr2:1183807 Cpe07g00525 Cpe-Chr7:3466551 0 wgd
Cpe06g00211 Cpe-Chr6:1124965 Cpe07g00525 Cpe-Chr7:3466551 2.35E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00525 - - csv:101211594 694.886