Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00533 ATGGCTAATTGGTGGAGAAAAGAGAGCCATAAAGGAACCCCTGTTGTTGTAAAGATGGAGAATCCCAACTGGTCAATGGTTGAACTTCAAGGCCCTTCCGATGATGACTTCATTATCGCCGCCGAGTCGCCGCCGGGTAGAATCAGAGAGAAAGGACGAGGAAAAAACGCCAAGCAACTCACTTGGGTTCTTCTTCTTAAAGCTCATAAGGCTGCCGGTTGTTTAACTTCCATTGGCTCTGCATTGGTTAACATCGGCGCTGCTGTTAAACGCCGTGTTGCTTCCGGTAAAACCGATGCCGACCTCGACAACGACAATGACAACGCCGACAGCGGCGTGAGGGAAAACCCAACTGTCAAAACCAGGTTTTATTTGTTTATTAAGATTTTCCTTTGGGTGTCGGTGGGTCTGTTAGGGTTTGAAGTGGCGGCGTATTACAAGGGCTGGCATTTTAGCGCACCCCATCTTGAATTGAACTACTTTTGGGCATACCCATTTGGGGTTAAGGATGTTTTTGATTGGATTTACTCGAAATGGGTTGTGATTCGTGTGGATTATGTTGCTCCTCCTCTCCAGTTTTTGGCCAATGTTTGTATAGTGTTGTTCCTCATTCAAACTCTGGATAGGTTGATTCTTTGTTTGGGTTGTTTCTGGATCCGCTTCAAGAAAATCAAACCGGTTCCTAATGCTTCGGCGTTCGATCTTGAATCTGGAGAGACTGGTTACTTCCCTATGGTTCTTGTTCAGATCCCAATGTGCAATGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTGTATGCAACTTAGACTGGCCAAAAGACAAGTTACTGATTCAGGTTCTCGACGACTCGGATGATCCAATCACCGTATTGCTGATCCAAGAGGAGGTTCGTAAATGGCAGCAACTCAACGCCAACATCGTGTACCGACATAGGGTGATTCGAGAGGGGTATAAGGCAGGCAATCTCAAGTCTGCCATGAGTTGCAGCTATGTCAAAGACTATGAATTTGTTGCTATCTTTGATGCTGATTTTCAACCTGCCTCTGATTTCCTTAAAAGAACACTTCCTCATTTTAAGTGCCAATGTGAATTACCCGAATCGTATGAAGCGTATAGAAAACAACAGCACCGATGGCATTCTGGACCGATGCAATTGTTTCGTCTTTGTTTGCCTGATATCGTTCGATCAAAGATTGGCATATGGAAGAAATTCAACTTGATCTTCCTGTTCTTTCTGCTACGAAAGCTGATATTACCGTTTTATTCATTTACACTTTTCTGCATTATTCTTCCGATGACGATGTTCGTTCCCGAAGCCGTGTTACCTGCGTGGGTCGTATGTTACATTCCAGCCACCATGTCTTTTCTCAACATTCTTCCAGCACCAAAGTTCTTCCCTTTCATTGTCCCTTACCTCCTTTTCGAGAACACAATGTCGGTAACAAAGTTCAACGCAATGGTTTCGGGACTTTTTCAACTCGGCAGTGCATACGAATGGGTCGTTACGAAGAAATCAGGTCGATCCTCCGAGGGTGATCTCGTCTCGATGGTCGGGAAAAAAGAGTTGAACACTGAAAAGAGTGCATCAGCTACCAACCTTGAGGAGATTGAGTTAATACAAAAACAGGACAAGAATTTGTCGAAGAAGAAGCATAATAGAATATACATGAAGGAACTAGCATTGGCTTTCCTTCTTCTAACAGCCTCAGCTAGAAGCCTTCTCTCAGCTCAAGGGATTCATTTCTACTTCTTGATGTTTCAAGGAATATCCTTTCTCCTCGTCGGTCTCGACTTGATCGGCGAGCAGTGCCAATGTGAATTACCCGAATCGTATGAAGCGTATAGAAAACAACAGCACCGATGGCATTCTGGACCGATGCAATTGTTTCGTCTTTGTTTGCCTGATATCGTTCGATCAAAGATTGGCATATGGAAGAAATTCAACTTGATCTTCCTGTTCTTTCTGCTACGAAAGCTGATATTACCGTTTTATTCATTTACACTTTTCTGCATTATTCTTCCGATGACGATGTTCGTTCCCGAAGCCGTGTTACCTGCGTGGGTCGTATGTTACATTCCAGCCACCATGTCTTTTCTCAACATTCTTCCAGCACCAAAGTTCTTCCCTTTCATTGTCCCTTACCTCCTTTTCGAGAACACAATGTCGGTAACAAAGTTCAACGCAATGGTTTCGGGACTTTTTCAACTCGGCAGTGCATACGAATGGGTCGTTACGAAGAAATCAGGTCGATCCTCCGAGGGTGATCTCGTCTCGATGGTCGGGAAAAAAGAGTTGAACACTGAAAAGAGTGCATCAGCTACCAACCTTGAGGAGATTGAGTTAATACAAAAACAGGACAAGAATTTGTCGAAGAAGAAGCATAATAGAATATACATGAAGGAACTAGCATTGGCTTTCCTTCTTCTAACAGCCTCAGCTAGAAGCCTTCTCTCAGCTCAAGGGATTCATTTCTACTTCTTGATGTTTCAAGGAATATCCTTTCTCCTCGTCGGTCTCGACTTGATCGGCGAGCAGTGCCAATGTGAATTACCCGAATCGTATGAAGCGTATAGAAAACAACAGCACCGATGGCATTCTGGACCGATGCAATTGTTTCGTCTTTGTTTGCCTGATATCGTTCGATCAAAGATTGGCATATGGAAGAAATTCAACTTGATCTTCCTGTTCTTTCTGCTACGAAAGCTGATATTACCGTTTTATTCATTTACACTTTTCTGCATTATTCTTCCGATGACGATGTTCGTTCCCGAAGCCGTGTTACCTGCGTGGGTCGTATGTTACATTCCAGCCACCATGTCTTTTCTCAACATTCTTCCAGCACCAAAGTTCTTCCCTTTCATTGTCCCTTACCTCCTTTTCGAGAACACAATGTCGGTAACAAAGTTCAACGCAATGGTTTCGGGACTTTTTCAACTCGGCAGTGCATACGAATGGGTCGTTACGAAGAAATCAGGTCGATCCTCCGAGGGTGATCTCGTCTCGATGGTCGGGAAAAAAGAGTTGAACACTGAAAAGAGTGCATCAGCTACCAACCTTGAGGAGATTGAGTTAATACAAAAACAGGACAAGAATTTGTCGAAGAAGAAGCATAATAGAATATACATGAAGGAACTAGCATTGGCTTTCCTTCTTCTAACAGCCTCAGCTAGAAGCCTTCTCTCAGCTCAAGGGATTCATTTCTACTTCTTGATGTTTCAAGGAATATCCTTTCTCCTCGTCGGTCTCGACTTGATCGGCGAGCAGTGCCAATGTGAATTACCCGAATCGTATGAAGCGTATAGAAAACAACAGCACCGATGGCATTCTGGACCGATGCAATTGTTTCGTCTTTGTTTGCCTGATATCGTTCGATCAAAGATTGGCATATGGAAGAAATTCAACTTGATCTTCCTGTTCTTTCTGCTACGAAAGCTGATATTACCGTTTTATTCATTTACACTTTTCTGCATTATTCTTCCGATGACGATGTTCGTTCCCGAAGCCGTGTTACCTGCGTGGGTCGTATGTTACATTCCAGCCACCATGTCTTTTCTCAACATTCTTCCAGCACCAAAGTTCTTCCCTTTCATTGTCCCTTACCTCCTTTTCGAGAACACAATGTCGGTAACAAAGTTCAACGCAATGGTTTCGGGACTTTTTCAACTCGGCAGTGCATACGAATGGGTCGTTACGAAGAAATCAGGTCGATCCTCCGAGGGTGATCTCGTCTCGATGGTCGGGAAAAAAGAGTTGAACACTGAAAAGAGTGCATCAGCTACCAACCTTGAGGAGATTGAGTTAATACAAAAACAGGACAAGAATTTGTCGAAGAAGAAGCATAATAGAATATACATGAAGGAACTAGCATTGGCTTTCCTTCTTCTAACAGCCTCAGCTAGAAGCCTTCTCTCAGCTCAAGGGATTCATTTCTACTTCTTGATGTTTCAAGGAATATCCTTTCTCCTCGTCGGTCTCGACTTGATCGGCGAGCAGGTTGTTTGA 4005 43.6 MANWWRKESHKGTPVVVKMENPNWSMVELQGPSDDDFIIAAESPPGRIREKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSALVNIGAAVKRRVASGKTDADLDNDNDNADSGVRENPTVKTRFYLFIKIFLWVSVGLLGFEVAAYYKGWHFSAPHLELNYFWAYPFGVKDVFDWIYSKWVVIRVDYVAPPLQFLANVCIVLFLIQTLDRLILCLGCFWIRFKKIKPVPNASAFDLESGETGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKDKLLIQVLDDSDDPITVLLIQEEVRKWQQLNANIVYRHRVIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPASDFLKRTLPHFKCQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGIWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAVLPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLVSMVGKKELNTEKSASATNLEEIELIQKQDKNLSKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLMFQGISFLLVGLDLIGEQCQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGIWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAVLPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLVSMVGKKELNTEKSASATNLEEIELIQKQDKNLSKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLMFQGISFLLVGLDLIGEQCQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGIWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAVLPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLVSMVGKKELNTEKSASATNLEEIELIQKQDKNLSKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLMFQGISFLLVGLDLIGEQCQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGIWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAVLPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLVSMVGKKELNTEKSASATNLEEIELIQKQDKNLSKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLMFQGISFLLVGLDLIGEQVV 1334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3530141 3538969 - Cp4.1LG07g04700.1 Cpe07g00533 472340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00533 1334 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 8 360 - -
Cpe07g00533 1334 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 360 603 - -
Cpe07g00533 1334 SUPERFAMILY Nucleotide-diphospho-sugar transferases 246 428 IPR029044 -
Cpe07g00533 1334 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 846 1089 - -
Cpe07g00533 1334 PANTHER - 8 360 - -
Cpe07g00533 1334 PANTHER - 603 846 - -
Cpe07g00533 1334 PANTHER - 360 603 - -
Cpe07g00533 1334 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 603 846 - -
Cpe07g00533 1334 Pfam Glycosyl transferase family 2 249 364 IPR001173 -
Cpe07g00533 1334 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 237 379 IPR029044 -
Cpe07g00533 1334 PANTHER - 846 1089 - -
Cpe07g00533 1334 PANTHER - 1089 1333 - -
Cpe07g00533 1334 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 1089 1333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00533 - - - csv:101203245 651.358
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00240 Cpe07g00533 CCT
Cpe06g00220 Cpe07g00533 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00533 Cpe-Chr7:3530141 Cpe17g01126 Cpe-Chr17:8546138 2.33E-110 dispersed
Cpe02g00240 Cpe-Chr2:1233732 Cpe07g00533 Cpe-Chr7:3530141 4.12E-114 wgd
Cpe06g00220 Cpe-Chr6:1169376 Cpe07g00533 Cpe-Chr7:3530141 3.39E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g605 Blo01g01484 Blo12g00794 Bda01g00601 Bda03g00159 Bpe02g00467 Bpe04g00141 . Bma01g02228 . Cmo12g00551 Cma01g01758 Cma09g00311 Car01g01374 Car12g00556 Sed10g1150 Cpe06g00220 Cpe07g00533 Bhi04g00461 Tan02g1687 Cmetu03g1896 . Hepe08g1357 . Lcy13g2156 Cla08g01643 Cam08g2147 Cec08g1735 Cco08g1854 Clacu08g1835 . Cre08g1618 Cone4ag1635 Cone7ag1317 Cone17ag0903 Cone20ag0246 Lsi04g01454 Csa04g02506 . Cme03g02127 . . . . . . . . Sed11g1870 Cmo01g01821 Cmo09g00311 Cma12g00615 . . Car09g00263 . Cpe02g00240 Bhi09g03190 Tan01g4659 Cmetu07g2267 . Hepe01g1852 Mch11g0387 . . . . . . . . Lsi08g01551 Csa02g01868 Chy07g00213 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01232 . 220 380 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Cpe16g00215 . 265 427 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
Cpe06g00399 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.1
Cpe13g00918 CCT 6 665 REM Transcription Factor Family AT2G24630 68.6 1.1e-266 916.4
Cpe01g02362 CCT 4 662 REM Transcription Factor Family AT2G24630 69.1 9.2e-266 913.3
Cpe02g00395 . 1 598 REM Transcription Factor Family AT2G24630 64.8 9.3e-250 860.1
Cpe02g00240 CCT 1 636 REM Transcription Factor Family AT2G24630 55.7 1.3e-214 743.4
Cpe06g00220 CCT,CST 1 611 REM Transcription Factor Family AT2G24630 52.5 9.1e-197 684.1
Cpe07g00533 CCT,CST 5 603 REM Transcription Factor Family AT2G24630 52.7 2.2e-190 662.9
Cpe13g00780 . 37 175 REM Transcription Factor Family AT2G24630 56.8 1.2e-39 162.2
Cpe06g00399 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.1
Cpe13g00918 CCT 6 665 REM Transcription Factor Family AT2G24630 68.6 1.1e-266 916.4
Cpe01g02362 CCT 4 662 REM Transcription Factor Family AT2G24630 69.1 9.2e-266 913.3
Cpe02g00395 . 1 598 REM Transcription Factor Family AT2G24630 64.8 9.3e-250 860.1
Cpe02g00240 CCT 1 636 REM Transcription Factor Family AT2G24630 55.7 1.3e-214 743.4
Cpe06g00220 CCT,CST 1 611 REM Transcription Factor Family AT2G24630 52.5 9.1e-197 684.1
Cpe07g00533 CCT,CST 5 603 REM Transcription Factor Family AT2G24630 52.7 2.2e-190 662.9
Cpe13g00780 . 37 175 REM Transcription Factor Family AT2G24630 56.8 1.2e-39 162.2
Cpe06g00399 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.1
Cpe13g00918 CCT 6 665 REM Transcription Factor Family AT2G24630 68.6 1.1e-266 916.4
Cpe01g02362 CCT 4 662 REM Transcription Factor Family AT2G24630 69.1 9.2e-266 913.3
Cpe02g00395 . 1 598 REM Transcription Factor Family AT2G24630 64.8 9.3e-250 860.1
Cpe02g00240 CCT 1 636 REM Transcription Factor Family AT2G24630 55.7 1.3e-214 743.4
Cpe06g00220 CCT,CST 1 611 REM Transcription Factor Family AT2G24630 52.5 9.1e-197 684.1
Cpe07g00533 CCT,CST 5 603 REM Transcription Factor Family AT2G24630 52.7 2.2e-190 662.9
Cpe13g00780 . 37 175 REM Transcription Factor Family AT2G24630 56.8 1.2e-39 162.2
Cpe05g01232 . 220 380 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Cpe16g00215 . 265 427 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0055195 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00533 Cpe_Chr07 FPKM 2.01938 1.695418 2.705777 2.007217 4.72958 5.960217 5.526696 4.42788 3.942971 4.929145