Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00536 ATGGATGAAATGGAATTTTCTGCGCTTCTAACTTCAGTTGGTATCAATATTGGCATCTGTGTGATGCTTTTCTCTCTGTATTCAATATTACGAAAGCAACCGAGCAACATAACGGTGTATTTCGGTCGAAAGATTGCGTCGAGAAAGTTGAAACACTGTGAAACCTTTTGCTTTGATAGATTTGTTCCTTCCCCTAGTTGGATAGTGAAAGCTTGGGAAACAACTGAGGAAGAAATTTTGGCTCTCGATGGCTTAGATTCTGTGGTTTTTCTCAGGATAATAATATTCAGCATTCGGGTTTTTTCAATTGCTGCCATCACTTGCCTGTTTCTAGTGCTTCCAGTAAATTATTATGGTCAAGAAACGACTCACAAGCTGATACCTTCCGAGTCGCTTGACGTTTTTTCCATTGAGAACGTCAAGGAAAATTCTAAGTGGCTTTGTGCCCATTGTATCGCTTTATACGTCATATGTTGTTCGGCTTGTGTGCTCCTTTACTTTGAGTACTTAAGCATAAGTAGAATGAGACTTATCTACATCACTGGTGCTCAAATGAATCCTACTTATTTTACGGTTTTAGTCCGGTCGATTCCGTGGTCTCCAGATGAATCTTATAGTGAAACTGTTCGGAAGTTCTTCACCAATTACCATGAATCCGGTTACTTGTCGCACCAAATGATATATCGGTCGGGTACCGTTCAGAAACTGTTGAGTGATGCAGAGAAAATGTACAACATGATGAAGGAAAATTCGGTCGAGATGCACTGTCAGAAGTTCAAAGGAGGATGTTTTTGTGCAGGACCAACAAATTCTTTTGCGATTCTTCCAAGTGTAAATGATAGTGTGACAGATAAGAACCTATATGGTGATATGGACATGTTGGCTGGAGAAAAGGAATGTTCAGCTGCTTTTGTATTCTTCAAGACTCGGTATGCTGCGCTTATGGCTGCGACCGCTCTTCAGTCAGCAAATCCTATGTCGTGGGCGACAGACTTAGCTCCAGCGCCTCATGATGTTTATTGGTCAAACCTTTCTATACCATATCGGCAACTTTGGATTCGAAAGATAGGAACACTGGTTGCTGCTACCGCATTCATGCTCGTGTTTTTGCTTCCTGTAACGCTCGTACAAAGCATGACGCAGCTGGAACAATTACAGCAAGCATTCCCATTCCTTAAAGGCCTCTTGAAAAAGAAATATATGAGCGAACTGGTGACCGGATACTTACCGAGCGTCATATTGATTCTATTTATGTATCTGGTTCCACCGACAATGATGTCGTTTTCAGCCCTGGAGGGATCTATTTCTCGCAGTGGGCGGAAACGGAGTGCATGCCTTAAAGTCTTGTACTTCACAATATGGAACGTCTTTTTCGTTAACGTATTTACGGGGTCGATTCTTCGTACGTTGAATGTCTTTTTTAGTGTAAAGGATATACCTGCTACATTTGGCAAAGCGGTACCGGCACAGGCTAGTTTCTTCTTGACTTATGTTCTATCATCTGGTTGGGCAAGTTTGTCTTGTGAAGTTATGCAACTTTTTCCTCTTACTTGCAATTTGATCAGAAGATGGATTCTTAGAATCAAGAGCGAACCACTTTTCGAAACTCTTTCGTTCCCATATCACACGGAAGTTCCTCGAATTCTCCTGTTCGGTTTCCTCGGCTTCACGTGTTGCATCTTGGCTCCTTTGATCACTCCCTTCTTGCTGTTTTACTTTTTTCTTGCCTACCTCGTTTACAAAAACCAGATTCTCAACGTGTACGTATCGAAATACGAAAGCGGAGGACAATTTTGGCCTATAGCTCACAACACAACCATCTTTGCTATGGTAGTAGCTCAAATAATTGCTCTGGGAGTGTTTGGTCTAAAAGAATCTCCAGTTGCATCAGGTTTCACAATCCCATTAATCATCGGCACGCTCCTATTTCACGAGTATTGCAGGCAGCGATTCGGTCCAATATTCAAAAACACAGCTGCAGAGGTGCTTATTGAAATGGACAGGAAAGATGAACAATGTGGTAGGCTGGAAGAGATGTATAAAAAGTTGCGCACGGCGTATTGCCAGTTCACACTGTTGGCTAAACGAGACACGAGTACGTCGGGATGTTCGAGTAATCACAACAACGAAAACAGCATTATCGACACTGAAAGTGCAAAACCA 2163 42.12 MDEMEFSALLTSVGINIGICVMLFSLYSILRKQPSNITVYFGRKIASRKLKHCETFCFDRFVPSPSWIVKAWETTEEEILALDGLDSVVFLRIIIFSIRVFSIAAITCLFLVLPVNYYGQETTHKLIPSESLDVFSIENVKENSKWLCAHCIALYVICCSACVLLYFEYLSISRMRLIYITGAQMNPTYFTVLVRSIPWSPDESYSETVRKFFTNYHESGYLSHQMIYRSGTVQKLLSDAEKMYNMMKENSVEMHCQKFKGGCFCAGPTNSFAILPSVNDSVTDKNLYGDMDMLAGEKECSAAFVFFKTRYAALMAATALQSANPMSWATDLAPAPHDVYWSNLSIPYRQLWIRKIGTLVAATAFMLVFLLPVTLVQSMTQLEQLQQAFPFLKGLLKKKYMSELVTGYLPSVILILFMYLVPPTMMSFSALEGSISRSGRKRSACLKVLYFTIWNVFFVNVFTGSILRTLNVFFSVKDIPATFGKAVPAQASFFLTYVLSSGWASLSCEVMQLFPLTCNLIRRWILRIKSEPLFETLSFPYHTEVPRILLFGFLGFTCCILAPLITPFLLFYFFLAYLVYKNQILNVYVSKYESGGQFWPIAHNTTIFAMVVAQIIALGVFGLKESPVASGFTIPLIIGTLLFHEYCRQRFGPIFKNTAAEVLIEMDRKDEQCGRLEEMYKKLRTAYCQFTLLAKRDTSTSGCSSNHNNENSIIDTESAKP 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3551850 3556594 + Cp4.1LG07g04730.1 Cpe07g00536 472343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00536 721 PANTHER CSC1-LIKE PROTEIN RXW8 6 707 - -
Cpe07g00536 721 MobiDBLite consensus disorder prediction 698 721 - -
Cpe07g00536 721 Pfam Late exocytosis, associated with Golgi transport 9 168 IPR032880 -
Cpe07g00536 721 Pfam Calcium-dependent channel, 7TM region, putative phosphate 354 621 IPR003864 GO:0016020
Cpe07g00536 721 Pfam Cytosolic domain of 10TM putative phosphate transporter 190 343 IPR027815 -
Cpe07g00536 721 Coils Coil 666 686 - -
Cpe07g00536 721 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 6 707 IPR045122 GO:0005227
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00536 K21989 TMEM63, CSC1; calcium permeable stress-gated cation channel - csv:101213759 1247.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01486 Cpe-Chr1:8873100 Cpe07g00536 Cpe-Chr7:3551850 0 dispersed
Cpe07g00536 Cpe-Chr7:3551850 Cpe17g00840 Cpe-Chr17:6522910 1.03E-120 dispersed
Cpe07g00536 Cpe-Chr7:3551850 Cpe07g00538 Cpe-Chr7:3565777 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g597 . . Bda01g00805 . . . . . . Cmo12g00556 . . . . Sed11g0906 . Cpe07g00536 Bhi04g00469 Tan02g1680 Cmetu03g1782 . Hepe08g1363 . Lcy13g2161 Cla08g01647 Cam08g2150 Cec08g1739 Cco08g1857 Clacu08g1838 . Cre08g1622 Cone4ag1639 . Cone17ag0908 Cone20ag0252 . . . Cme03g02131 . . . . . . . . . . . Cma12g00619 . . . . . . . . . . . . Cla05g02118 Cam05g2272 Cec05g2293 Cco05g2334 Clacu05g2269 Cmu05g2132 Cre05g2255 Lsi08g01555 Csa02g01864 Chy03g01622 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003386 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 3 1 1 1 1 6 8 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00536 Cpe_Chr07 FPKM 224.183914 231.865326 523.766907 493.221985 195.39151 203.661377 172.955353 87.773453 91.410797 77.983414