Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00540 ATGTCTGTTGGAGGCGGCTGCCATGGCGATGCGTCTAGGGCTGTATCTTCCATGCCGGAGCCTTGCCGGTCATCGCCGTTCAGCGATGATGAGAGCCGTGATATTGATTGGGATAGCCTTGGATTTGGGCTGTTGCCAACAGATTACATGTATGTTATGAAATGCTCTGAAGATGAGAATTTCGAACGAGGTCAGCTGAGTCGTTATGGGAACATTGAGTTAAGCCCTGCTGCTGGGGTTCTAAATTATGGCCAGGGATTGTTTGAAGGTCTGAAAGCATATAGGAAAGAAGATGGAGGCCTTCTTCTCTTTCGTCCGCACCAAAATGCTCTTCGTATGAGGACCGGTGCCGAACGAATGTGTATGCCGTCGCCCTCCGTCGAACAATTTGTTGATGCTGTGAAGCAAACTGCCATTGCTAACCGGCGTTGGGTCCCTCCATCCGGGAAAGGATCATTATACCTGAGGCCTTTGCTCGTCGGGACTGGTCCCGTTCTCGGCTTGGCTCCGGCGCCTGAATATACTTTTCTTGTTTATGCTTCCCCTGTTCGCAACTATTTCAAGGAAGATTCAGGAGCCTTGAACCTATACGTCGAGACCGAGTTCGTTCGTGCATCTCGCGGTGGAACTGGAGGTGTGAAAACCATCTCAAATTATGCTCCAGCTTTAAAAGCTATCACCAGAGCCAAAAGTAGAGGCTTTTCTGATGTCTTATATCTTGATTCAGTGAATAAGAGAACTCTGGAGGAAGTTTCTTCTTGCAACATTTTTCTTGTCAAGGGAAATGTTATATCGACTCCTGCTACAAGTGGAACGATTCTTCCAGGAGTAACCCGGAAAAGCGTCATCGATATAGCCCGTAATCGTGGTTACGAGGTTGAGGAACGGGCTATCGACATGGATGAACTGTTCGACGCTCGTGAAGTTTTCTGCACGGGAACTGCTGTCGGTGTGGCCCCTGTTGGCAGCATCACTTGTATGGATAAAAGGATTGAGTACCAAACAGGTGCTGGGACAACATGTCAGGAACTATACTCAACTCTTGTTGGGATTCAAACTGGAACCATCGAGGATAAGAATGGCTGGACTGTTGAGATCTCTTAA 1104 48.1 MSVGGGCHGDASRAVSSMPEPCRSSPFSDDESRDIDWDSLGFGLLPTDYMYVMKCSEDENFERGQLSRYGNIELSPAAGVLNYGQGLFEGLKAYRKEDGGLLLFRPHQNALRMRTGAERMCMPSPSVEQFVDAVKQTAIANRRWVPPSGKGSLYLRPLLVGTGPVLGLAPAPEYTFLVYASPVRNYFKEDSGALNLYVETEFVRASRGGTGGVKTISNYAPALKAITRAKSRGFSDVLYLDSVNKRTLEEVSSCNIFLVKGNVISTPATSGTILPGVTRKSVIDIARNRGYEVEERAIDMDELFDAREVFCTGTAVGVAPVGSITCMDKRIEYQTGAGTTCQELYSTLVGIQTGTIEDKNGWTVEIS 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3582573 3585586 - Cp4.1LG07g06170.1 Cpe07g00540 472347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00540 367 Gene3D - 15 196 IPR043131 -
Cpe07g00540 367 CDD BCAT_beta_family 73 354 IPR033939 GO:0004084|GO:0009081
Cpe07g00540 367 MobiDBLite consensus disorder prediction 1 31 - -
Cpe07g00540 367 Pfam Amino-transferase class IV 86 324 IPR001544 GO:0003824
Cpe07g00540 367 PIRSF BCAT1 15 367 IPR005786 GO:0004084|GO:0009081
Cpe07g00540 367 ProSitePatterns Aminotransferases class-IV signature. 250 279 IPR018300 GO:0003824
Cpe07g00540 367 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 10 366 - -
Cpe07g00540 367 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 27 363 IPR036038 GO:0003824
Cpe07g00540 367 Gene3D - 197 367 IPR043132 -
Cpe07g00540 367 PANTHER AMINO ACID AMINOTRANSFERASE 10 366 IPR005786 GO:0004084|GO:0009081
Cpe07g00540 367 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 62 366 IPR005786 GO:0004084|GO:0009081
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00540 K00826 E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42] - csv:101214004 642.114
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00506 Cpe-Chr10:2974494 Cpe07g00540 Cpe-Chr7:3582573 9.05E-175 wgd
Cpe11g00101 Cpe-Chr11:550606 Cpe07g00540 Cpe-Chr7:3582573 0 wgd
Cpe19g00699 Cpe-Chr19:5488239 Cpe07g00540 Cpe-Chr7:3582573 7.37E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g592 . . . . . . . . . Cmo12g00558 . . . . Sed11g0902 . Cpe07g00540 Bhi04g00473 Tan02g1671 Cmetu03g0040 . Hepe08g1366 . Lcy13g2163 Cla08g01649 Cam08g2152 Cec08g1741 Cco08g1859 Clacu08g1840 . Cre08g1624 . . Cone17ag0909 Cone20ag0253 . . . Cme03g02133 . . . . . . . . . . . Cma12g00621 . Car05g00099 . . . . . . . . . . . . . . . . . Lsi08g01558 . Chy03g01624 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007941 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00540 Cpe_Chr07 FPKM 0.521739 0.0 0.772971 1.268027 0.913662 0.0 1.257253 0.959691 1.024925 0.870319