Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00541 ATGGAAGATCAGTACAACCCTAATTTTCATTATCATCATCATCAACAACAACACCAACAAGTTCATGATTTTCAAATAAGTAGCGGTGGGAGTAGTAAGGATATTGATATCATGAAGGCCAAAATCATCTCCCACTCTCAATTCTCTAATCTCCTCCAAGCTTTCTTGGATTGCAAAAAGGTGGGAGCTCCGGCGGAGGTGGCGGCGGAGCTTGGGTCGGTAGGGGAGGAGTTTGAGGAGCGGCGGCGGTGTTCAATGGCGGCGAGTGGGGGTTGTAGTGATCCAGAACTTGATCAGTTCATGGAAGGTTACTATAGGATGTTGGTGAAGTATAGAGAGGAGCTGACAAAGCCTATTCAAGAAGCTGCTGATTTCATGGAGAGAGTTGAATCTCAGCTCAATACTCTCTGTAATGGCTCCTTCCAAATCTTAGCTTCTGATGCAGCGACAGAAAATCGCGACGGAATGGGATCATCGGAGGAGGAGCTGGAGAAGGGCGGGGACGGTGGAAGAGATGCAACGGAACAGATCGACCCACGAGCAGACGAGCGAGAGCTAAAGAATCACTTACTAAAGAAGTACAGTGGGTATCTGAGCACTCTAAAGCAAGAGCTTTCGAAGAAGAAGAAGAAGGGAAAGCTCCCAAAAGACGCAAGGCAGGAGCTGCTGAGATGGTGGGAAGTGCACAGCAAATGGCCATACCCATCGGAGGCAGAGAAGTTGGCGCTAGCGGAATCAACTGGGTTGGATCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCATTGGAAGCCGTCTGAGGATGTACAGTTGATGGGTATGGAGGGGTTTTACCATCCCAACACTGCTGCTGCTGCTGCTGCTTTTTACTTCGATGGGCATTACATGGGCGATGCCCATTACCGTTTGGGTCCATGA 927 48.33 MEDQYNPNFHYHHHQQQHQQVHDFQISSGGSSKDIDIMKAKIISHSQFSNLLQAFLDCKKVGAPAEVAAELGSVGEEFEERRRCSMAASGGCSDPELDQFMEGYYRMLVKYREELTKPIQEAADFMERVESQLNTLCNGSFQILASDAATENRDGMGSSEEELEKGGDGGRDATEQIDPRADERELKNHLLKKYSGYLSTLKQELSKKKKKGKLPKDARQELLRWWEVHSKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQLMGMEGFYHPNTAAAAAAFYFDGHYMGDAHYRLGP 308
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 3587464 3592663 - Cp4.1LG07g06160.1 Cpe07g00541 472348
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00541 308 Pfam ELK domain 185 206 IPR005539 GO:0003677
Cpe07g00541 308 Pfam KNOX2 domain 92 137 IPR005541 GO:0003677|GO:0005634
Cpe07g00541 308 SMART ELK_2 96 116 IPR005539 GO:0003677
Cpe07g00541 308 SMART ELK_2 185 206 IPR005539 GO:0003677
Cpe07g00541 308 SMART KNOX1_2 36 80 IPR005540 GO:0003677|GO:0005634
Cpe07g00541 308 CDD homeodomain 217 269 IPR001356 GO:0003677
Cpe07g00541 308 MobiDBLite consensus disorder prediction 154 184 - -
Cpe07g00541 308 SUPERFAMILY Homeodomain-like 206 277 IPR009057 -
Cpe07g00541 308 Pfam Homeobox KN domain 225 264 IPR008422 GO:0003677|GO:0006355
Cpe07g00541 308 SMART HOX_1 207 272 IPR001356 GO:0003677
Cpe07g00541 308 SMART KNOX2_2 87 138 IPR005541 GO:0003677|GO:0005634
Cpe07g00541 308 ProSiteProfiles 'Homeobox' domain profile. 205 268 IPR001356 GO:0003677
Cpe07g00541 308 MobiDBLite consensus disorder prediction 149 184 - -
Cpe07g00541 308 Pfam KNOX1 domain 38 79 IPR005540 GO:0003677|GO:0005634
Cpe07g00541 308 Gene3D - 202 275 - -
Cpe07g00541 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 299 - -
Cpe07g00541 308 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 11 299 - -
Cpe07g00541 308 ProSitePatterns 'Homeobox' domain signature. 243 266 IPR017970 GO:0000981|GO:0006355
Cpe07g00541 308 ProSiteProfiles ELK domain profile. 185 205 IPR005539 GO:0003677
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe02g00244 Cpe07g00541 CCT
Cpe07g00541 Cpe11g00100 CCT
Cpe06g00228 Cpe07g00541 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00541 Cpe-Chr7:3587464 Cpe09g00513 Cpe-Chr9:3419266 5.65E-76 dispersed
Cpe11g00100 Cpe-Chr11:547226 Cpe07g00541 Cpe-Chr7:3587464 4.75E-152 wgd
Cpe02g00244 Cpe-Chr2:1263078 Cpe07g00541 Cpe-Chr7:3587464 4.23E-117 wgd
Cpe06g00228 Cpe-Chr6:1210210 Cpe07g00541 Cpe-Chr7:3587464 2.51E-125 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49757 PF03791 KNOX2 7.90E-23 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00541 - - cpep:111798143 585.104