Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe07g00541 | ATGGAAGATCAGTACAACCCTAATTTTCATTATCATCATCATCAACAACAACACCAACAAGTTCATGATTTTCAAATAAGTAGCGGTGGGAGTAGTAAGGATATTGATATCATGAAGGCCAAAATCATCTCCCACTCTCAATTCTCTAATCTCCTCCAAGCTTTCTTGGATTGCAAAAAGGTGGGAGCTCCGGCGGAGGTGGCGGCGGAGCTTGGGTCGGTAGGGGAGGAGTTTGAGGAGCGGCGGCGGTGTTCAATGGCGGCGAGTGGGGGTTGTAGTGATCCAGAACTTGATCAGTTCATGGAAGGTTACTATAGGATGTTGGTGAAGTATAGAGAGGAGCTGACAAAGCCTATTCAAGAAGCTGCTGATTTCATGGAGAGAGTTGAATCTCAGCTCAATACTCTCTGTAATGGCTCCTTCCAAATCTTAGCTTCTGATGCAGCGACAGAAAATCGCGACGGAATGGGATCATCGGAGGAGGAGCTGGAGAAGGGCGGGGACGGTGGAAGAGATGCAACGGAACAGATCGACCCACGAGCAGACGAGCGAGAGCTAAAGAATCACTTACTAAAGAAGTACAGTGGGTATCTGAGCACTCTAAAGCAAGAGCTTTCGAAGAAGAAGAAGAAGGGAAAGCTCCCAAAAGACGCAAGGCAGGAGCTGCTGAGATGGTGGGAAGTGCACAGCAAATGGCCATACCCATCGGAGGCAGAGAAGTTGGCGCTAGCGGAATCAACTGGGTTGGATCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCATTGGAAGCCGTCTGAGGATGTACAGTTGATGGGTATGGAGGGGTTTTACCATCCCAACACTGCTGCTGCTGCTGCTGCTTTTTACTTCGATGGGCATTACATGGGCGATGCCCATTACCGTTTGGGTCCATGA | 927 | 48.33 | MEDQYNPNFHYHHHQQQHQQVHDFQISSGGSSKDIDIMKAKIISHSQFSNLLQAFLDCKKVGAPAEVAAELGSVGEEFEERRRCSMAASGGCSDPELDQFMEGYYRMLVKYREELTKPIQEAADFMERVESQLNTLCNGSFQILASDAATENRDGMGSSEEELEKGGDGGRDATEQIDPRADERELKNHLLKKYSGYLSTLKQELSKKKKKGKLPKDARQELLRWWEVHSKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQLMGMEGFYHPNTAAAAAAFYFDGHYMGDAHYRLGP | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3587464 | 3592663 | - | Cp4.1LG07g06160.1 | Cpe07g00541 | 472348 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe07g00541 | 308 | Pfam | ELK domain | 185 | 206 | IPR005539 | GO:0003677 | |
Cpe07g00541 | 308 | Pfam | KNOX2 domain | 92 | 137 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe07g00541 | 308 | SMART | ELK_2 | 96 | 116 | IPR005539 | GO:0003677 | |
Cpe07g00541 | 308 | SMART | ELK_2 | 185 | 206 | IPR005539 | GO:0003677 | |
Cpe07g00541 | 308 | SMART | KNOX1_2 | 36 | 80 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe07g00541 | 308 | CDD | homeodomain | 217 | 269 | IPR001356 | GO:0003677 | |
Cpe07g00541 | 308 | MobiDBLite | consensus disorder prediction | 154 | 184 | - | - | |
Cpe07g00541 | 308 | SUPERFAMILY | Homeodomain-like | 206 | 277 | IPR009057 | - | |
Cpe07g00541 | 308 | Pfam | Homeobox KN domain | 225 | 264 | IPR008422 | GO:0003677|GO:0006355 | |
Cpe07g00541 | 308 | SMART | HOX_1 | 207 | 272 | IPR001356 | GO:0003677 | |
Cpe07g00541 | 308 | SMART | KNOX2_2 | 87 | 138 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe07g00541 | 308 | ProSiteProfiles | 'Homeobox' domain profile. | 205 | 268 | IPR001356 | GO:0003677 | |
Cpe07g00541 | 308 | MobiDBLite | consensus disorder prediction | 149 | 184 | - | - | |
Cpe07g00541 | 308 | Pfam | KNOX1 domain | 38 | 79 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe07g00541 | 308 | Gene3D | - | 202 | 275 | - | - | |
Cpe07g00541 | 308 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 11 | 299 | - | - | |
Cpe07g00541 | 308 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 11 | 299 | - | - | |
Cpe07g00541 | 308 | ProSitePatterns | 'Homeobox' domain signature. | 243 | 266 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe07g00541 | 308 | ProSiteProfiles | ELK domain profile. | 185 | 205 | IPR005539 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00244 | Cpe07g00541 | CCT | |
Cpe07g00541 | Cpe11g00100 | CCT | |
Cpe06g00228 | Cpe07g00541 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe07g00541 | Cpe-Chr7:3587464 | Cpe09g00513 | Cpe-Chr9:3419266 | 5.65E-76 | dispersed | |
Cpe11g00100 | Cpe-Chr11:547226 | Cpe07g00541 | Cpe-Chr7:3587464 | 4.75E-152 | wgd | |
Cpe02g00244 | Cpe-Chr2:1263078 | Cpe07g00541 | Cpe-Chr7:3587464 | 4.23E-117 | wgd | |
Cpe06g00228 | Cpe-Chr6:1210210 | Cpe07g00541 | Cpe-Chr7:3587464 | 2.51E-125 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49757 | PF03791 | KNOX2 | 7.90E-23 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe07g00541 | - | - | cpep:111798143 | 585.104 |