Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00542 ATGCTTCTCAATCCATCGGCCCATTTTTCATCCTGGGACTCCCTTGACGATCCCACCGCCGCCGCTACCGCCGCCGCAATCTCCTCCTATCTCACTGGCGGTCACGTGTCGCCGCTTGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGATATGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTCCGTTCGTGTACACGTGGGAGGTCGCACGATTGGACTAAATGTCCGAACGCTCACGCCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAACTATTCTGGTACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAACAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAATTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCGCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAACCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA 915 56.39 MLLNPSAHFSSWDSLDDPTAAATAAAISSYLTGGHVSPLDSPTRAVMEFDSSFWEEQDMPAAVDAFTCDDFRMYEFKVRSCTRGRSHDWTKCPNAHAGEKARRRDPRKFNYSGTECPALRHGCCNKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIAAAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3599148 3600062 + Cp4.1LG07g06240.1 Cpe07g00542 472349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00542 304 PANTHER UNKEMPT FAMILY MEMBER 5 243 IPR045234 -
Cpe07g00542 304 PANTHER UNKEMPT FAMILY MEMBER 249 300 IPR045234 -
Cpe07g00542 304 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 249 300 - -
Cpe07g00542 304 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872
Cpe07g00542 304 Gene3D - 107 179 - -
Cpe07g00542 304 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Cpe07g00542 304 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Cpe07g00542 304 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 5 243 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00542 Cpe11g00092 CCT
Cpe07g00542 Cpe11g00092 ECH
Cpe06g00230 Cpe07g00542 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00542 Cpe-Chr7:3599148 Cpe03g00399 Cpe-Chr3:2174527 2.49E-51 dispersed
Cpe11g00092 Cpe-Chr11:489610 Cpe07g00542 Cpe-Chr7:3599148 3.23E-175 wgd
Cpe18g00382 Cpe-Chr18:5117200 Cpe07g00542 Cpe-Chr7:3599148 7.12E-82 wgd
Cpe02g00246 Cpe-Chr2:1280451 Cpe07g00542 Cpe-Chr7:3599148 4.19E-17 wgd
Cpe06g00230 Cpe-Chr6:1226770 Cpe07g00542 Cpe-Chr7:3599148 5.02E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49758 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00542 - - cpep:111798847 608.986