Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00551 ATGGACGCGATCGCTTTCTCTGCCGCTCATTCCAATATGAAGCTTCTCGATTCCAACACCCTTAATCCGGATCGCACGGTTTCTACGTCATTCTCTGTGCCGAAATCTCTTGTGTCTTTCTCTTGTAAATCCTCTGGAAAATTGCAAGTTCGTGATAAGTCTAGAACTCAAGGATTAGTGGTTTCTTGTTCTAGCTCCAATGGTCAGGGGCTACAACTTTCTGGCCCTGTTGAGAAGAGAGGCCGTCTTGGACAAGCATTTTGCTCAGTAGGAACTGTCTCCTATGGTGAATTTGCTTTAGAATCTCACTCTCAGGCAGTAGAAGAGAAGGTTGGAGTTCTGCTCCTGAATCTAGGAGGGCCAGAAACGCTTGATGATGTTCAGCCATTTTTGTACAACCTATTTGCTGATCCGGATATTATTCGGCTCCCGAGGTTGTTCCGTTTTCTCCAAGAGCCATTGGCGAAGTTAATTTCTACTTTTCGTGCTCCGAAAAGCAAAGAAGGGTATGCTTCAATTGGTGGTGGCTCACCTTTGCGTAAAATAACAGATGAACAGGCACAGGCGCTTAAAATGGCTTTGGAAGAGAAAAACATATCTGCTAATGTCTATGTCGGAATGCGCTATTGGTACCCTTTCACAGAGGAAGCGATTCAGCAAATTAAGAGGGATGGGATAACAAAACTTGTGGTGCTGCCACTGTATCCACAGTACTCTATTTCGACAACCGGGTCCAGTATTCGTGTTCTCCAGAAGATTTTCAGGGAAGACGCATATCTCTCGACATTGCCTGTTTCGATTATAAAGTCGTGGTATCAACGAGAAGGGTATATTAAGTCGATGGCCGACTTGATTCAGACAGAGCTGAAGAATTTCGTTAATCCTCAGGAGGTTATGATTTTCTTTAGTGCACATGGGGTTCCCGTCAGTTATGTTGAGAATGCTGGAGATCCTTACAAAGATGAAATGGAGGAGTGCATCTACCTAATCATGCAAGAGTTGAAGGGCAGAGGGGTTGGAAATGAGCATACTCTTGCTTATCAGAGCCGCGTTGGACCTGTACAATGGCTAAAGCCATACACTGATGAAGTTCTTGTTGAGCTTGGCCAGAAGGGTATCAAGAGCCTCCTAGCCGTTCCCGTGAGCTTTGTGAGTGAGCACATCGAGACTCTTGAGGAGATAGATATGGAGTATAAGCACTTGGCACTTGAATCTGGGATCGAAAACTGGGGGCGTGTGCCCGCTCTCAACTGCAAGTCTTCATTCATTGTGGATCTGGCCGATGCAGTAGTCGAAGCCCTTCCATCTGCTACGGCATTGTCACCCCACGCAGGCTCCGCAGATACAAATGATCGTGGTTCTTTTCGATTTGATCCTATCAGATTGTTATTTGGTTCAATCCTTGCATTCATCTTGTTACTCTCACCCAAAGCGTTTCTAGCGTTTAGGAATAATTTCATTTGA 1464 45.29 MDAIAFSAAHSNMKLLDSNTLNPDRTVSTSFSVPKSLVSFSCKSSGKLQVRDKSRTQGLVVSCSSSNGQGLQLSGPVEKRGRLGQAFCSVGTVSYGEFALESHSQAVEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQEPLAKLISTFRAPKSKEGYASIGGGSPLRKITDEQAQALKMALEEKNISANVYVGMRYWYPFTEEAIQQIKRDGITKLVVLPLYPQYSISTTGSSIRVLQKIFREDAYLSTLPVSIIKSWYQREGYIKSMADLIQTELKNFVNPQEVMIFFSAHGVPVSYVENAGDPYKDEMEECIYLIMQELKGRGVGNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGIKSLLAVPVSFVSEHIETLEEIDMEYKHLALESGIENWGRVPALNCKSSFIVDLADAVVEALPSATALSPHAGSADTNDRGSFRFDPIRLLFGSILAFILLLSPKAFLAFRNNFI 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3654793 3657834 + Cp4.1LG07g06260.1 Cpe07g00551 472358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00551 487 Hamap Coproporphyrin III ferrochelatase [cpfC]. 109 434 IPR001015 GO:0004325|GO:0006783
Cpe07g00551 487 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 49 486 - -
Cpe07g00551 487 CDD Ferrochelatase_C 281 417 IPR033644 -
Cpe07g00551 487 Gene3D - 110 435 - -
Cpe07g00551 487 Pfam Ferrochelatase 110 433 IPR001015 GO:0004325|GO:0006783
Cpe07g00551 487 ProSitePatterns Ferrochelatase signature. 300 319 IPR019772 GO:0004325|GO:0006783
Cpe07g00551 487 PANTHER FERROCHELATASE 49 486 IPR001015 GO:0004325|GO:0006783
Cpe07g00551 487 TIGRFAM hemH: ferrochelatase 109 433 IPR001015 GO:0004325|GO:0006783
Cpe07g00551 487 CDD Ferrochelatase_N 111 273 IPR033659 -
Cpe07g00551 487 Gene3D - 272 415 - -
Cpe07g00551 487 SUPERFAMILY Chelatase 109 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00551 K01772 hemH, FECH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] - csv:101216568 801.586
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00551 Cpe11g00083 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01026 Cpe-Chr5:6718640 Cpe07g00551 Cpe-Chr7:3654793 0 transposed
Cpe11g00083 Cpe-Chr11:438704 Cpe07g00551 Cpe-Chr7:3654793 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g60 . Blo12g01008 . . . . . . Cmo05g00110 Cmo12g00571 . Cma05g00103 . Car12g00578 Sed08g1759 Cpe07g00551 . Bhi04g00495 Tan02g1649 Cmetu03g0633 . Hepe08g1382 . Lcy13g2176 . . . . . . . Cone4ag1651 Cone7ag1299 . . . . . . . . . . . . . . . . . . Cma12g00630 . Car05g00089 Cpe11g00083 . . . . . . . . . . . . . . . Lsi08g01574 Csa02g01847 Chy03g01637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010052 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00551 Cpe_Chr07 FPKM 12.924214 12.7925 17.4238 15.283199 16.190666 10.597183 17.427429 20.139677 23.475075 22.772295