Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00555 ATGAGTACGAAATCGGATTTAGAGTTCAGAGCGACAATTGAGATGGTACTGACAAGACCTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTACGATGACTGCAGTGGATCAGAAAATAAGCGGTCGTGAGAAGGACAAAGGAGATGGCACAGAGAGGACATGGGCCATCAGCCTTAAACAAAGAGTGAGTGGTTCTCCAAACTTGCACCTTTTATGGAGAAACAAAAGCCAATTCGAGAGTGACTTGGGGAATGCTCTGGTGAATATGGCCAGTACAAATTCTGTCATTGTAGGTGACATTCTGCCTCTTCGCACTCCAATTGCAGCTGGATTTCCTATCCTTTTGACTCTGCGGGAATCTGGATGCCCTGCTACTGATGCAGATGATCATATAGTTGATCAATTGGGGTTCTTAGGCTCTTCTCCAATGTCCACTGCCCCGCAACCGAACGATTTGGGGGATGTTTCCGGAGGTTGTTTGAATTTCTCTGGTAATGCTGAGTTTCAAGATCAGCTAGCAGGAGCAATTCCTATTGCTTCTGTTTCTCCAGTGAATGCAAAAGATTCAGCATTTTCAGCCCCTCAGTTCCAGCAATTAGGGACTTTTAGAACTCGCTTCGAACACAGTTCCTCTAATGCTTCGAACTCTTCATTTGCAAGTTCTCTAAACTGTGAAGGTGACGAGTCTCTATGTAATGCAAATAACGAGTGGGAAAACGGTCATTTTCTTTATAATCAGCCAATTGCTAGGGATAATCCAGTAAGATCAGATTTCCAGACCATTTCATCGATGGAGAACCTGGTTCAGAATGGCTGGATGCCATCCAACACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTGAGTCTTGCCACATCCGAACCTGTGATCGTTGGAGGAACCAATTTCCTGGACCAGTATTCACAGTTGACTTTTCCTGGTGCTACTCAGCCTTGCTTGAACAACACAGAATTAGCCTGCAACTCCATGGATCTCTCTCTAAGTTACAATTATGGTAGTAGTCCTGTTCATCCCTCTCAAGCAATATCAGGATCAAGATATCTTTCCGTCATTCAGGACATACTTTCCCAAATTGCAAGCTATCCACTGGAAAGTTCAGATCAAGTTAGCCATTCATCAACCACAGTTGGATTTGTGCCATTCTCATCAAGTTCCCTGGAGACTCAATGGCCGAAATCATCTGGTGATGCCAAGAGATCCCATCTGTTGACTTTACAACAACTGATTGATGAGAGGTACACTCAATGCTTGGACGAGATTCATACTGTTACATCTGCATTTCATGCTGCCTCCAATTTGGATCCTCGCTTGCATTCTCATTATACTTACCAGACAATCACTTCTGTGTATAAAAGCCTGAGGGAGAAGATTACTAATTGTATCCTTGCAATGGGAATGCATTCTAACACAGTCTGCACCAAGGAGAAGGAAAAGTCCTTCGAGACAACGTTCATTCGGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGGGCACAGAGAGGCTTGCCTGAAAACTCTGTCTCAGTTCTAAGGGCGTGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCACTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTATCTAATTGGTTTATCAATGCACGTGTCCGGTTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCTTTCAAAATGATTTAGGATGA 1785 43.36 MSTKSDLEFRATIEMVLTRPGRNRSFNRENPDILITMTAVDQKISGREKDKGDGTERTWAISLKQRVSGSPNLHLLWRNKSQFESDLGNALVNMASTNSVIVGDILPLRTPIAAGFPILLTLRESGCPATDADDHIVDQLGFLGSSPMSTAPQPNDLGDVSGGCLNFSGNAEFQDQLAGAIPIASVSPVNAKDSAFSAPQFQQLGTFRTRFEHSSSNASNSSFASSLNCEGDESLCNANNEWENGHFLYNQPIARDNPVRSDFQTISSMENLVQNGWMPSNTMNSKLWNELSLSLATSEPVIVGGTNFLDQYSQLTFPGATQPCLNNTELACNSMDLSLSYNYGSSPVHPSQAISGSRYLSVIQDILSQIASYPLESSDQVSHSSTTVGFVPFSSSSLETQWPKSSGDAKRSHLLTLQQLIDERYTQCLDEIHTVTSAFHAASNLDPRLHSHYTYQTITSVYKSLREKITNCILAMGMHSNTVCTKEKEKSFETTFIRKQWALQQLKRKDNQLWRAQRGLPENSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSFQNDLG 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3675794 3680767 - Cp4.1LG07g06190.1 Cpe07g00555 472362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00555 594 SUPERFAMILY Homeodomain-like 518 583 IPR009057 -
Cpe07g00555 594 SMART prehox3 348 471 IPR006563 -
Cpe07g00555 594 SMART HOX_1 514 578 IPR001356 GO:0003677
Cpe07g00555 594 CDD homeodomain 514 575 IPR001356 GO:0003677
Cpe07g00555 594 ProSiteProfiles 'Homeobox' domain profile. 511 574 IPR001356 GO:0003677
Cpe07g00555 594 Pfam Homeobox KN domain 531 570 IPR008422 GO:0003677|GO:0006355
Cpe07g00555 594 PANTHER HOMEOBOX PROTEIN ATH1 157 591 - -
Cpe07g00555 594 Pfam Associated with HOX 354 470 IPR006563 -
Cpe07g00555 594 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 157 591 - -
Cpe07g00555 594 Gene3D - 517 579 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00555 - - - mcha:111004597 699.893
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00555 Cpe11g00080 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00555 Cpe-Chr7:3675794 Cpe03g00311 Cpe-Chr3:1597464 2.50E-44 dispersed
Cpe11g00080 Cpe-Chr11:425117 Cpe07g00555 Cpe-Chr7:3675794 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g68 . . . . Bpe02g01536 . . . Cmo05g00107 Cmo12g00574 . Cma05g00100 . Car12g00582 . Cpe07g00555 . Bhi04g00500 . . . Hepe08g1385 . Lcy13g2179 . . . . . . . . . Cone17ag0921 Cone20ag0264 . . . . Blo17g00292 . Bda01g01326 Bda13g01607 Bpe14g00258 . Bma01g00927 . . . . . Cma12g00634 . Car05g00086 Cpe11g00080 . . . . . . . . . . . . . . . Lsi08g01577 Csa02g01843 Chy03g01640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003901 2 8 1 1 2 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49760 PF07526 POX 1.90E-15 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00555 Cpe_Chr07 FPKM 5.789986 4.626774 4.248207 6.045054 6.905126 1.493274 7.046038 3.689773 7.202698 6.763728