Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00574 ATGGACGGAGGTGCTCCGTACAATCCACGTACTGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGGAGAGCCGGTTTAATTAAGGCTCTCACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGGTTTCCTAGTGAGCAATGGGAAGTCAATTTACCTGCCGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAAGACTGGCTATCCTTGGTCGCTGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTGATATGATAAATGATCTTCCAACAATATTTGAAGTTGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAAGTACGAAGGCCGTTCAATCAAAAGATGAGGACGAGGAAGGTTTGGATGAGGAAGACGAGGAAGAACACGGTGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAATGTGTAAAGATCACTCCGGCAAGGGCAGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAAAGAATCCGACCCTGA 762 42.91 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFDMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSTKAVQSKDEDEEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3810000 3813620 + Cp4.1LG07g06120.1 Cpe07g00574 472381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00574 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Cpe07g00574 253 Pfam PHD-finger 200 249 IPR019787 -
Cpe07g00574 253 SMART PHD_3 199 247 IPR001965 -
Cpe07g00574 253 MobiDBLite consensus disorder prediction 145 174 - -
Cpe07g00574 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 253 - -
Cpe07g00574 253 PANTHER CPG BINDING PROTEIN 4 253 IPR045104 GO:0006355|GO:0042393
Cpe07g00574 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Cpe07g00574 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Cpe07g00574 253 CDD PHD_AL_plant 199 249 IPR044104 -
Cpe07g00574 253 MobiDBLite consensus disorder prediction 145 193 - -
Cpe07g00574 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cpe07g00574 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00574 Cpe11g00358 CCT
Cpe07g00574 Cpe11g00358 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00796 Cpe-Chr1:4703440 Cpe07g00574 Cpe-Chr7:3810000 4.95E-11 dispersed
Cpe07g00574 Cpe-Chr7:3810000 Cpe11g00358 Cpe-Chr11:1957860 0 dispersed
Cpe07g00574 Cpe-Chr7:3810000 Cpe07g01069 Cpe-Chr7:9501216 3.15E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49764 PF12165 Alfin 2.00E-69 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00574 - - csv:101208889 462.996