Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00576 ATGAAGCCGAATCAGGGCAGTCGCCGTGCTCTGTGGTTCATCGCAGGCTGCGTGTTGTTGGTTGCGACGGCGGGGGAGGCTCAGAATGTGAGCGTGGGGGTGGTGTTGGATATGGAGAGCTGGGTTGGGAAGATGGGGTTGAGTTGTATTCACATGTCGTTGTCGGAATTCTATGAAGCTAATTCTCACTACAACACTAGGATTGTTCTTCACCCCAAGGACTCCGCCGCCGATGTTGTTGGTGCGGCGGCTGCAGCTGTTGACCTGATAAAGAACAATAAAGTTGAAGCAATTTTAGGGCCAACTACTTCGATGCAGACCAACTTTGTGATCAAGCTCGGCCACAAAGCTCATGTCCCCATCCTTACCTTCACTGCCTCCACCCCCCCTCTCGCCTCCTACCGCAGCCCCTACTTCTTTCGTCTCACCCAGACTGACTCTGCCCAAGTTGCCGCTATTAGCGCCCTGGTCAAAGCCTACAATTGGAGACAAGTCGTTTTGATCTACCAAGACGACGAGTTTGGAGACGGGATGTTACCGTATTTGATCGACGCATTGCAGGATGTGAATGCACGCGTCCCATATCGGAGCGTCATCGATCCAACGGCCACCGAGGATCAGATCGGGGAAGAGCTTTACAAATTGATGACAATGCCGACCAGAGTGTTCTTGGTCCACATGCAGCCGTCTCTAGCGATTCGCTTATTCGCTAAGGCCAACAAAATTGGAATGATGAGGGAAGGTTACGCTTGGATTTTGACTGACGCCATCGCGAATTTACTCGATTCCATGACTTCCTCTGTTCTAAACTCCATGGAAGGAGCTTTGGGAGTGAAGACATATGTCCCAAAATCAATGGAGCTCGACCGTTTCAAAATTAAATGGAAACGGGAATTCGTAATGGAAAATTCTGTCCTCACCGATCCACATTTAGACATCTTCGGATTGTGGGCCTATGATGCAGCTCGAGCACTGGCAATGGCAATTGAGAAAACAGGGGCCAAAAACTTCACATTCGAAAACCCAAATGGATCTGAAAATCTAACCGATCTTCAAACTCTGGGGGTTTCTCAAAACGGGGAGAAAATTGTGGAGGCGTTGTCGAAGACGAAGTTCATGGGGCTGACTGGAAATTACGAGATCGTGAATGGGCAGCTGCAATCGGCGGCATTTGAGATTGTGAATGTGAATAGTAATGGGGGAAACAGAGTTGGGCTTTGGAATCCTGAAAAGGGGTTGTTGAGTAACAATATGACAGTGATCTGGCCGGGGAATACGGCGGCGGCGCCGAAAGGGTGGGAGATTCCAACGGCGGGGAAAAGGTTGAGAATTGGGGTTCCGGTGAAGGAAGGGTATAGTGAGTTCGTGACAGTGAATGGAAAGAAGGTGGAAGGGTATTGTAGGGACGTGTTCGATGCGGTAATAGAAGCGCTTCCATACGCCCTTCCGTTTGATTACATTCCCTTTGCACTTCCAAATGGATCTAGCGCCGGTTCCTACAATGATCTCATCATGCAAGTTAACAGAGGGGTCTACGACGGTGCAGTAGGAGACTTAACCATCGTAGAAAATAGATCTAGGTACGTTGATTTCACCTTGCCATTCACAGAGTCCGGAGTTTCAATGATCGTTCCAACACAAGCCAACTCCAAGAACAGAGCATGGCTTTTTCTGAAGCCTCTCACTTTAGACCTTTGGATCACAAGCTTCTGCTTCTTCGTCTTCATGGGGTTTGTCGTTTGGATTCTCGAACATCGAATCAACCAAGACTTTCGTGGTCCTCCCACTCATCAGATCGGTACCAGCCTCTGGTACTCCTTTTGCACCATGGTCTTCGCCCAAAGGGAGACTTTGATAAGCAATTTGGCGAGGTTTGTAGTGGTGATATGGTTCTTCGTGGTGTTCGTTCTAACTCAAAGCTACACGGCAAGCTTGACTTCTCTGTTGACAGTGCAACAATTACAACCCACCATTACAAATATAAATGAGTTGTTGAAGACGCAGCCATGGGTGGGATATCAAGATGGTTCATTTGTTGGGGGGCTGTTGACCTCTGTGGGGATTAAGAATCTCAAGTCTTATGGGTCTCCTGAGGAACTCGACGAGTTGCTCAAACTAGGAAGCTCTAATGGCGGCATTGATGCTGCTTTTGATGAAATGCCTTACGTTAAGCTCTTCCTTTCCATGTTTGGTGATAAGTACACGATGGGTGATCCCAACTACAAAACGGATGGATTTGGATTTGCATTTCCCATTGGCTCGCCATTGGTAGCAGACATATCAAGAGCGGTGTTGAATGTGACAGAGAGTGAAAAGATGAACCAATTACAAAGGAAATGGTTTAAGAATGAAGACAACTCGTGGTCTTCCATCTCCAAGATCACTTCTTCGAGGCTCAACTTAAGCAGCTTTTGGGGCCTATTTCTCATTGCCGGCACTGCCGCTATCATCGCCCTCCTCATCTACTTCATCATTTTCTTTTACAAAGAACAACACAAGCTTTCTCACGCCTCCAACTCATCTATTGGCAGTAAAATTCGAGCGTTGCTTAGAATCTATGATAAAATAGACTTGACTTCACACACGTTCAGAAAGAGTAATCATCTTCAGGTAGCAGACAACAAGATTCATGCGATCCATGGTGACTCCGTTGGTGCCTCACCGAGCTCGAATTACCCGTCTAGTCCATCGAATAATTCGGTCCATGACACGAGCTGTGAGTTCTTCTCTAAGTCGGGAGATGTGACTCCGAATAATCAAGTAATGGAAATGGTGATCCATTCAACAATGGAGTTCGCTCCTCAAAACTAG 2811 47.42 MKPNQGSRRALWFIAGCVLLVATAGEAQNVSVGVVLDMESWVGKMGLSCIHMSLSEFYEANSHYNTRIVLHPKDSAADVVGAAAAAVDLIKNNKVEAILGPTTSMQTNFVIKLGHKAHVPILTFTASTPPLASYRSPYFFRLTQTDSAQVAAISALVKAYNWRQVVLIYQDDEFGDGMLPYLIDALQDVNARVPYRSVIDPTATEDQIGEELYKLMTMPTRVFLVHMQPSLAIRLFAKANKIGMMREGYAWILTDAIANLLDSMTSSVLNSMEGALGVKTYVPKSMELDRFKIKWKREFVMENSVLTDPHLDIFGLWAYDAARALAMAIEKTGAKNFTFENPNGSENLTDLQTLGVSQNGEKIVEALSKTKFMGLTGNYEIVNGQLQSAAFEIVNVNSNGGNRVGLWNPEKGLLSNNMTVIWPGNTAAAPKGWEIPTAGKRLRIGVPVKEGYSEFVTVNGKKVEGYCRDVFDAVIEALPYALPFDYIPFALPNGSSAGSYNDLIMQVNRGVYDGAVGDLTIVENRSRYVDFTLPFTESGVSMIVPTQANSKNRAWLFLKPLTLDLWITSFCFFVFMGFVVWILEHRINQDFRGPPTHQIGTSLWYSFCTMVFAQRETLISNLARFVVVIWFFVVFVLTQSYTASLTSLLTVQQLQPTITNINELLKTQPWVGYQDGSFVGGLLTSVGIKNLKSYGSPEELDELLKLGSSNGGIDAAFDEMPYVKLFLSMFGDKYTMGDPNYKTDGFGFAFPIGSPLVADISRAVLNVTESEKMNQLQRKWFKNEDNSWSSISKITSSRLNLSSFWGLFLIAGTAAIIALLIYFIIFFYKEQHKLSHASNSSIGSKIRALLRIYDKIDLTSHTFRKSNHLQVADNKIHAIHGDSVGASPSSNYPSSPSNNSVHDTSCEFFSKSGDVTPNNQVMEMVIHSTMEFAPQN 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3849675 3853493 + Cp4.1LG07g05930.1 Cpe07g00576 472383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00576 936 Pfam Receptor family ligand binding region 50 398 IPR001828 -
Cpe07g00576 936 CDD PBP1_GABAb_receptor_plant 31 413 IPR044440 -
Cpe07g00576 936 Gene3D - 442 553 - -
Cpe07g00576 936 Gene3D - 147 310 - -
Cpe07g00576 936 Gene3D - 554 674 - -
Cpe07g00576 936 SUPERFAMILY Periplasmic binding protein-like I 25 433 IPR028082 -
Cpe07g00576 936 SMART GluR_14 441 783 IPR001320 GO:0015276|GO:0016020
Cpe07g00576 936 PIRSF IGluLR_plant 4 919 IPR017103 -
Cpe07g00576 936 Gene3D - 710 787 - -
Cpe07g00576 936 SUPERFAMILY Periplasmic binding protein-like II 417 783 - -
Cpe07g00576 936 Gene3D - 352 441 - -
Cpe07g00576 936 PANTHER GLUTAMATE RECEPTOR 2.9 30 877 - -
Cpe07g00576 936 Pfam Ligand-gated ion channel 783 814 IPR001320 GO:0015276|GO:0016020
Cpe07g00576 936 Pfam Bacterial extracellular solute-binding proteins, family 3 449 782 IPR001638 -
Cpe07g00576 936 CDD GluR_Plant 440 781 - -
Cpe07g00576 936 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 877 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01716 Cpe-Chr2:14058820 Cpe07g00576 Cpe-Chr7:3849675 0 dispersed
Cpe04g01284 Cpe-Chr4:10607156 Cpe07g00576 Cpe-Chr7:3849675 0 dispersed
Cpe07g00576 Cpe-Chr7:3849675 Cpe18g00601 Cpe-Chr18:6368971 0 dispersed
Cpe11g00229 Cpe-Chr11:1228725 Cpe07g00576 Cpe-Chr7:3849675 3.83E-06 dispersed
Cpe07g00576 Cpe-Chr7:3849675 Cpe07g00580 Cpe-Chr7:3892223 1.11E-66 proximal
Cpe07g00575 Cpe-Chr7:3817467 Cpe07g00576 Cpe-Chr7:3849675 2.26E-12 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00576 K05387 - csv:101205977 1314.29