Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00577 ATGGCGATCCAATTTAAGTTCAGGAGCTCGGTGATCTTCGACTCGGTGGATATCGATGGCCGACCCTCCATATCAATTGGCGATCTTAAATCCAAAATTATTCGGATGAAGAACCTCGATACCTGCCAAAACTTTGATCTCGTTTTCTCCGATGCCCGTACCGGCCAAGGTATTCCGTCATCTCTCTGCCGCTATTGGTTGCATGATTTGGTTGACGAGAAATTTGAAATTCCTAGTGGTTCATGCGTGATCATAAAGAGAGTTCCTGCGGGATCAGTTCCTTCCAATGTTGTACATCACGACTTGTTTGGGAAATTTCAAGTCAAAGACACTGACATGGTTAATTCATCTCATCCAGTGAAGGCTGAGACGGACAATTTTGATGATTTTGGTGTAGACTTATACCCTATTCGCAAAAGAACATCATCAATTTCTCTCAATCATAAAAAATATGATGCTGTTAGACATTATAAGGAGACTGAAAGAGGATATATTGAGCCTGAAGGAAGTGGCATTAGTGAGGCTATTCAAAGAGATTCAAGTCATGGTACAACAGTTGGAGGAACTGAGCTGCAAACAAACATAAAAGTTCATATTGGCGAGGGAATTGGTTTGGAGAAACCAGTTGTTGCAATGGCTTCAGTGAATCATGATTGTGAAATACCGCCAGAACTGAAGTGTACTCTTTGCAAATCACTCTTTGTGGATGCCGTTATTATTGGTTGCTGTAAGCATAGCTTTTGTGAGAAATGCATTCATCATGTTCTACTGCGAAAGGCAAAGTGCCCTAATTGTGCCTCTACTAAAAGTAGACTAGAAGATTTGTTGCCGAATTTATCTCTTAGGCAAAATGTTGCTGATTTCCTTGAGTCTCAGATCCTGATGGGCAACCCAGACAATGCCATTCATCATGATGCACCAGATGAAGAATCAAGAATTGAAGGAGAGGACATGCCATTTCTGTCTTATGCTACCAGTAGGGGTTGTAATCAAGAAGTGGTGGAAGACATCAATGACTCATCATTAAAAAGAAATATGGTTGATGGAGCACTATTTGGATCGGGCCACCCTGAAAAATTTGGTGGTATGCCACAAGACCTTCATCCTTTTGATGATTGCCAAGGGGAAAGTCAGCCTGTTTTTGGGGATTTTAAGCATGGGTTGCTGATCAACGCCTCTGATATACCGGGAAAAATCCAAAACCTTGCAGATTTTAGAAGACAAAAAAAGCGTTGCCGTGCTTGTTACATGTGTGGTTCTCTGGACCATCTCATTAGAGACTGTCCAGTTGCTTCAAAGCCACATCCCATGCCTCTAATGGGAGCTACGCCATATTATGCATCACCTTGGCATCATGTCAGTTCCTTTTCAAACCTGTATGGTTGTGCCATGCCTTTCAATACATCAACGGTACCTGAAGCAAATTCTTACTGGGCATCTCTTTATGGTGGATATCCTGCCCCAAGTGGATATGTGGGCATGAGAGACATGACTGCTCCACCACTCCGGAAGATTGAAGAGTTCTGCGGTGGTTATTCACAATCCACAGACGTTAGTGACACTAATAAAAGAGGGATGATACCTGATAATCGTTCCAGGAGGGCAATGGCTTTCATCAATGAGGATGGGTGCGAGGGAGAAGATGATGTTGCTAAATATAGAGGCCTTCATGAGTGGGATGGAAAATCAAGAGACTATAGAATGCTCGAAGAAGAGGAACACCCACGTCGAGAAACTGCCAACGACGAAATAAATTGGCTGTATGACGAAAAAAGGAAGAGTTCCCGTTCTTCTAAAGATGCTATGATCAATCAATTCAACGGGAGATTAGGCCTGGACACAGAAGGCTTGCCTTGCAACACCAAAGTATTGACTAAGGAGAGGTCTGAACATCACCATAGAAGCTTCCGGGAGGTTGGTGGGAGGGCAGATGAATGTTGCAGTCATTTTAGCTCGAATCACCACAAAAAATGCAAATTGAAAGAAGATAAAACCAATGTGGTCGAGTTCGACTTAAAGCGACAAACAAAGAAGCATCCTAACGACTCAAAGTTTGATTTAGAACAAAGCTTTCCCAGATCGAGAGGTTCTAAGCACAATGCGCTCACTCAAGATCATCATCGGCAAATGGTTTGCGAGCCAAACGATAATCGTGTCCATAAATATAAACAAAGAAGGCAGTGA 2184 42.63 MAIQFKFRSSVIFDSVDIDGRPSISIGDLKSKIIRMKNLDTCQNFDLVFSDARTGQGIPSSLCRYWLHDLVDEKFEIPSGSCVIIKRVPAGSVPSNVVHHDLFGKFQVKDTDMVNSSHPVKAETDNFDDFGVDLYPIRKRTSSISLNHKKYDAVRHYKETERGYIEPEGSGISEAIQRDSSHGTTVGGTELQTNIKVHIGEGIGLEKPVVAMASVNHDCEIPPELKCTLCKSLFVDAVIIGCCKHSFCEKCIHHVLLRKAKCPNCASTKSRLEDLLPNLSLRQNVADFLESQILMGNPDNAIHHDAPDEESRIEGEDMPFLSYATSRGCNQEVVEDINDSSLKRNMVDGALFGSGHPEKFGGMPQDLHPFDDCQGESQPVFGDFKHGLLINASDIPGKIQNLADFRRQKKRCRACYMCGSLDHLIRDCPVASKPHPMPLMGATPYYASPWHHVSSFSNLYGCAMPFNTSTVPEANSYWASLYGGYPAPSGYVGMRDMTAPPLRKIEEFCGGYSQSTDVSDTNKRGMIPDNRSRRAMAFINEDGCEGEDDVAKYRGLHEWDGKSRDYRMLEEEEHPRRETANDEINWLYDEKRKSSRSSKDAMINQFNGRLGLDTEGLPCNTKVLTKERSEHHHRSFREVGGRADECCSHFSSNHHKKCKLKEDKTNVVEFDLKRQTKKHPNDSKFDLEQSFPRSRGSKHNALTQDHHRQMVCEPNDNRVHKYKQRRQ 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3855758 3863567 + Cp4.1LG07g05950.1 Cpe07g00577 472384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00577 727 MobiDBLite consensus disorder prediction 673 727 - -
Cpe07g00577 727 Pfam Zinc finger, C3HC4 type (RING finger) 226 265 - -
Cpe07g00577 727 MobiDBLite consensus disorder prediction 673 720 - -
Cpe07g00577 727 CDD vRING-HC-C4C4_RBBP6 222 265 - -
Cpe07g00577 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 294 IPR013083 -
Cpe07g00577 727 Pfam Zinc knuckle 413 429 IPR001878 GO:0003676|GO:0008270
Cpe07g00577 727 ProSiteProfiles Zinc finger RING-type profile. 227 265 IPR001841 -
Cpe07g00577 727 ProSiteProfiles DWNN domain profile. 3 89 IPR014891 GO:0008270
Cpe07g00577 727 Pfam DWNN domain 3 89 IPR014891 GO:0008270
Cpe07g00577 727 SUPERFAMILY RING/U-box 219 290 - -
Cpe07g00577 727 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBBP6-LIKE ISOFORM X1 1 720 - -
Cpe07g00577 727 Gene3D - 1 93 - -
Cpe07g00577 727 ProSiteProfiles Zinc finger CCHC-type profile. 415 429 IPR001878 GO:0003676|GO:0008270
Cpe07g00577 727 PANTHER RETINOBLASTOMA-BINDING PROTEIN 6 1 720 IPR033489 GO:0006397|GO:0016567|GO:0061630
Cpe07g00577 727 SMART DWNN_2 3 89 IPR014891 GO:0008270
Cpe07g00577 727 ProSitePatterns Zinc finger RING-type signature. 243 252 IPR017907 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00577 - - - bhj:120075688 1028.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00577 Cpe-Chr7:3855758 Cpe08g00731 Cpe-Chr8:5759635 3.69E-11 dispersed
Cpe07g00577 Cpe-Chr7:3855758 Cpe14g00934 Cpe-Chr14:7872565 6.97E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g150 . . . . . . . . . Cmo12g00602 . . . Car12g00644 . Cpe07g00577 . Bhi04g01513 Tan02g1585 . . Hepe08g1435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00661 . . . . . . . . . . . Cla08g00988 . . . . . . Lsi08g00832 . Chy03g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010055 0 4 0 0 0 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00577 Cpe_Chr07 FPKM 13.207018 13.923407 18.33708 16.038536 10.75439 11.534231 12.852136 14.392355 15.08344 13.735101