Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00590 ATGGGCAACCTCTGCGGCACTCCCGTCGACACCCACACCCCGCCGCCCACCAAGCCCTCCTCCCCAGTCTCCTCCCAACGCCACGCCTCCACCACGCCCCGGAATCTCAAAGTCTACACCTTGTCGGAGTTGAAGACGGCCACCAGGAATTTCCGGCCCGACACCATGCTGGGTGAGGGCGGATTTGGGAGAGTCTTCAAAGGCTGGGTCGATGAGACAACCTACGCGCCGTCCAAGGTCGGCGTCGGAATTCCTGTCGCCGTGAAAAAGTCAAACCCCGACAGCTCTCAGGGTCTTCGCGAATGGAAGCCATCCAAATGTGAAGGTGTAGAGCCACTTTCATGGGAAACAAGGATGAAAATAGCCACAGGGGCGGCGCGTGGTTTAACGTTCCTCCACACGTCGGAGAAGAGCGTGATTTACCGCGACTTCAAGGCGTCGAATATTCTTCTGGATGGGGATTTCCACGCAAAGCTGTCAGATTTTGGGCTTGCAAAATTCGGCCCATCTAATGGAGACACCCACGTCAGCACAAATCCAGTTGGCACTTATGGTTACGCTGCACCCGAGTACATTGCAACTGGACATTTGTACATAAAGAGTGACGTGTATGGGTTTGGTGTGGTGCTGCTTGAACTTCTAACTGGGCTGCGAGCAGTGGACCCAAACCGGCCCAGTCGGTCTCACAACTTGGTGGAGTGGGCCGAGCCGTCACTGGCCCACAAGAAGAAGATAAAGAAGCTAATGGACCCAAGGCTTGGGGACGACTACTCGCCCAAAGGAGCCTGGGCCTTAGCCGAACTCATTTTGAAATGTTTGGAGCAGAACCCTAGAAACCGGCCCTCCATGGAACAGGTGTTGGAGATTCTGGAGAAAGTCAGTATCCTTAAAGATAGGCCCAAGGAGCCCAAATCAAGGGCTAGGACGCCCACCCGTTATTAG 942 54.99 MGNLCGTPVDTHTPPPTKPSSPVSSQRHASTTPRNLKVYTLSELKTATRNFRPDTMLGEGGFGRVFKGWVDETTYAPSKVGVGIPVAVKKSNPDSSQGLREWKPSKCEGVEPLSWETRMKIATGAARGLTFLHTSEKSVIYRDFKASNILLDGDFHAKLSDFGLAKFGPSNGDTHVSTNPVGTYGYAAPEYIATGHLYIKSDVYGFGVVLLELLTGLRAVDPNRPSRSHNLVEWAEPSLAHKKKIKKLMDPRLGDDYSPKGAWALAELILKCLEQNPRNRPSMEQVLEILEKVSILKDRPKEPKSRARTPTRY 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3954274 3956313 - Cp4.1LG07g05800.1 Cpe07g00590 472397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00590 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Cpe07g00590 313 Gene3D Phosphorylase Kinase; domain 1 28 102 - -
Cpe07g00590 313 ProSitePatterns Protein kinases ATP-binding region signature. 57 90 IPR017441 GO:0005524
Cpe07g00590 313 MobiDBLite consensus disorder prediction 1 35 - -
Cpe07g00590 313 PANTHER OS01G0588500 PROTEIN-RELATED 109 307 - -
Cpe07g00590 313 PANTHER OS01G0588500 PROTEIN-RELATED 28 103 - -
Cpe07g00590 313 ProSiteProfiles Protein kinase domain profile. 1 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00590 313 Pfam Protein kinase domain 117 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00590 313 SUPERFAMILY Protein kinase-like (PK-like) 34 301 IPR011009 -
Cpe07g00590 313 Gene3D Transferase(Phosphotransferase) domain 1 103 307 - -
Cpe07g00590 313 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 109 307 - -
Cpe07g00590 313 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 28 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00590 - - - csv:101216893 524.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00590 Cpe-Chr7:3954274 Cpe05g00923 Cpe-Chr5:6065716 2.78E-103 dispersed
Cpe11g00787 Cpe-Chr11:6377463 Cpe07g00590 Cpe-Chr7:3954274 4.77E-43 transposed
Cpe11g00786 Cpe-Chr11:6375438 Cpe07g00590 Cpe-Chr7:3954274 1.11E-98 wgd
Cpe18g00318 Cpe-Chr18:4696122 Cpe07g00590 Cpe-Chr7:3954274 2.63E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g874 . Blo16g01128 . Bda11g01229 Bpe13g01425 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0606 Cone9ag0611 . . . . . . . Bda11g01229 . . . Bma06g00669 . . . . . . . . Cpe07g00590 . . . . . . . . . . . . . . . . . .
Vvi18g92 . . . . . . . . . Cmo12g00617 . . . Car12g00659 . . Cpe07g00590 . . . . . . . . . . . . . . . . Cone17ag1455 . . . . . Blo17g00905 . . . . . . . . . . Cma12g00679 . Car05g00857 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004298 1 1 1 0 0 0 1 1 1 1 1 0 2 1 0 2 1 0 3 1 1 0 0 0 0 2 0 0 0 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62511 PF00069 Pkinase 3.50E-28 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00590 Cpe_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.2071 0.0 0.024367 0.0