Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00598 ATGGAGACTTCTCTCAGATGTGGCGGAGACTCCAGAGCCTTAAGAATCCACGCCAAGGAGAAGATTCCTCTCGACTCCAACATTTTCTTGCAGGTTCATGGAGAGCTAGATACAAGAATGGGAGAACCGAGTCTACTTGCTGCTTCCGTGAGACAATTTTTCCCCGACTTGTTTGCAAGCGCGGGTATAGGGGTGCAATATGACAAATATAGGAAACTTCAGCATTTTGCTCGAGGGAAAATGTCTTTTCCTGTGACAACCGATGGTATGTTGCAATTTACTATTAAAGGGCAGTCTCATCATGACAAGGATTTTAAGCAGACTAATTTCAAAGGGGCTGCTGAATTTTCCTTGGGTGTATATAATGTCCAAGGGGAGCAAGATGTAAGGGTCAAACTAGGATTTGAAGTGTTCGAAAAGATACCATATCTTCAGATCAGGGAAAACAATTGGACATTGAATGCAGACATCAATGGTAGATGGAGTGTGAGATTCATCCTGTGA 504 43.06 METSLRCGGDSRALRIHAKEKIPLDSNIFLQVHGELDTRMGEPSLLAASVRQFFPDLFASAGIGVQYDKYRKLQHFARGKMSFPVTTDGMLQFTIKGQSHHDKDFKQTNFKGAAEFSLGVYNVQGEQDVRVKLGFEVFEKIPYLQIRENNWTLNADINGRWSVRFIL 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4020868 4025328 + Cp4.1LG07g05860.1 Cpe07g00598 472405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00598 167 PANTHER OUTER ENVELOPE PORE PROTEIN 21B, CHLOROPLASTIC 1 166 IPR034575 GO:0008308|GO:0044070
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00598 - - - csv:101218230 276.174
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00598 Cpe11g00778 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00778 Cpe-Chr11:6302468 Cpe07g00598 Cpe-Chr7:4020868 2.54E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g61 . . . . . . . . Cmo05g00986 Cmo12g00624 . . . Car12g00665 . . Cpe07g00598 Bhi04g01216 . . . . . . Cla08g00933 Cam08g1379 Cec08g0960 Cco08g1080 Clacu08g1086 . Cre08g0869 . . . . . . . Cme03g01331 . Blo18g00737 . Bda01g01569 Bpe02g01763 . . . . . . Cma12g00690 . Car05g00849 . Cpe11g00778 . . . . . . . . . . . . . . . Lsi08g00774 . Chy03g00606 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011259 1 1 1 0 1 1 2 0 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00598 Cpe_Chr07 FPKM 42.204369 37.093967 33.709747 32.876987 22.469177 25.41922 24.908321 33.96376 33.546902 38.179649