Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00604 ATGGGGTCCCAAGCGATGCGACGCGAAAAAATCTCCCAAAGTTCAAGCAAGAGATGTCATCCATTAGTTCCTTCCAATCTTCCTAGCTCATTGGAAGATAGGAACCGAAACATATCGAGTCTTATCACATCAAGAACAGAAGGTGAAATATTGTCATCTTCCAATTTGAAGTCTTTCTCTTTCAATGAACTCAAGAATGCAACTAGAAATTTTCGACCCGACAGTCTGTTAGGTGAAGGGGGATTTGGTTGTGTTTTCAAAGGATGGATTGATGAAAACACATGGGCCGCTACAAGGCCAGGATTGGGAATTGTTGTCGCTGTCAAGAAGCTTAAGCTTGAAGCTCCCCAAGGCCACAAGGAGTGGTTGGTTGTATGTTCGTGTCTGCTACTAACTGCATACGAATTTCAGACAGAAGTTAATTATTTGGGAAAATTTCATCACCCGAATCTAGTTAAGCTAATTGGGTATTGCTTGGAAGGTGAGAATCGGTTATTGGTGTACGAGTTTATGCCGAGAGGGAGTTTGGAGAATCATCTCTTCAGAACGTGTTCCCAACCTCTTTCTTGGGCAGTAAGGATCAAAGTGGCCATAGCTGCCGCCAGAGGTCTTTCTTTTCTTCACGAAGCCGAAGCGCCCGTCATTTATCGCGATTTCAAGGCATCCAACATCCTACTTGATGCAGAATTCAATGCTAAGCTTTCTGATTTTGGTTTGGCGAGGGCTGGTCCCACTGGAGATAGAACTCATGTAACTACTCAAGTTATGGGGACTCGAGGCTATGCTGCACCTGAATATGTTGCTACAGGTCGATTGACATCGAAAAGTGATGTTTATAGTTTTGGGGTTGTGTTACTCGAATTGTTATCTGGTCGACGTGCTGAAGACAATCTTGTCAATTGGGCAAGTCCATATTTGGGTGATAAAAGAAGGTTATTTCGAATTATGGACACCAAACTTGAGGGGCGGTATCCTCAAAAGGGAGCTTACATAGTCGCTAATTTGGCTACACAATGCCTTAGGAGTGAACCAAGAGCTCGACCACGAATGGTAGATATTTTGGGTGCATTAGAGGAGCTTGAATCCCTAAAAACTACAACTAGAATCTCACAACCAGTTCAACGTGCAACTCTTGCTTTGACAAACTCGAAGCCAAAGATTGATGCACCTCTTTTAATATCGCATCAGAAGTCACCACGACAATCATAA 1209 43.26 MGSQAMRREKISQSSSKRCHPLVPSNLPSSLEDRNRNISSLITSRTEGEILSSSNLKSFSFNELKNATRNFRPDSLLGEGGFGCVFKGWIDENTWAATRPGLGIVVAVKKLKLEAPQGHKEWLVVCSCLLLTAYEFQTEVNYLGKFHHPNLVKLIGYCLEGENRLLVYEFMPRGSLENHLFRTCSQPLSWAVRIKVAIAAARGLSFLHEAEAPVIYRDFKASNILLDAEFNAKLSDFGLARAGPTGDRTHVTTQVMGTRGYAAPEYVATGRLTSKSDVYSFGVVLLELLSGRRAEDNLVNWASPYLGDKRRLFRIMDTKLEGRYPQKGAYIVANLATQCLRSEPRARPRMVDILGALEELESLKTTTRISQPVQRATLALTNSKPKIDAPLLISHQKSPRQS 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4108756 4114300 - Cp4.1LG07g05690.1 Cpe07g00604 472411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00604 402 ProSitePatterns Protein kinases ATP-binding region signature. 77 110 IPR017441 GO:0005524
Cpe07g00604 402 Pfam Protein tyrosine and serine/threonine kinase 75 355 IPR001245 GO:0004672|GO:0006468
Cpe07g00604 402 PANTHER OS01G0588500 PROTEIN-RELATED 17 374 - -
Cpe07g00604 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Cpe07g00604 402 MobiDBLite consensus disorder prediction 1 31 - -
Cpe07g00604 402 SUPERFAMILY Protein kinase-like (PK-like) 55 360 IPR011009 -
Cpe07g00604 402 CDD STKc_IRAK 77 360 - -
Cpe07g00604 402 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 17 374 - -
Cpe07g00604 402 Gene3D Transferase(Phosphotransferase) domain 1 171 381 - -
Cpe07g00604 402 ProSiteProfiles Protein kinase domain profile. 71 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00604 402 Gene3D Phosphorylase Kinase; domain 1 42 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00604 - - - csv:101208008 603.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00543 Cpe-Chr5:3241259 Cpe07g00604 Cpe-Chr7:4108756 4.58E-147 dispersed
Cpe07g00604 Cpe-Chr7:4108756 Cpe14g01061 Cpe-Chr14:8860836 1.00E-130 dispersed
Cpe07g00604 Cpe-Chr7:4108756 Cpe05g00923 Cpe-Chr5:6065716 4.20E-151 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
Vvi18g10 . . . . . . . . . Cmo12g00648 . . . Car12g00685 . . Cpe07g00604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00715 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001456 1 3 2 0 2 0 4 0 0 2 1 0 4 3 0 4 0 0 4 0 3 0 0 0 0 3 0 0 0 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62512 PF07714 PK_Tyr_Ser-Thr 5.70E-44 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00604 Cpe_Chr07 FPKM 3.930444 5.138108 4.921475 5.112684 9.452355 7.886724 9.905903 0.979049 1.164981 1.010258