Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00605 ATGATCCCTTTTAGAGCCTTGTTTCTTTGTTCCTTGTTGTTTGTCGTCGTATGTGCCGATTCCGATGCCAATGCCGATCTTGAAGTCGATAAGACACCTGATGTTGAAGTTGATAAGATAAACGTTACTGATACCGATAAAGGAATTGATCTCGAAAAGGCTGATGAATACTGGCAAAAACGTGCTGCTGAAGCTCATAAGGCTGCTCAAAAGGCCTTCAATCCTGACCCCGATTCCGTTGCTGATAACTTTAACACAGCCGTTGGCCAGGAGATAGTGAACAGCAACAATTCAAGGAGGAGCTTGAGGAGATACAGTGGTCCATGCTTGGCGACCAACCCCATTGACCGATGCTGGAGGTGCGACCCAAATTGGGACAAGAATCGAAGAAAGCTAGCCGAATGTCCATTAGGGTTCGGCCACCAAACCATCGGCGGCAAGAGAGGACCCATTTACGTGGTGACAGACGCCTCCGATGAAAACCTAGTCGACCCCAAGCCTGGAACCCTACGCCACGCGGTTGTCCAAAACGGCCCAAGATGGATCATATTCGGGCGCAGCATGATCATCAGGCTATCCCAAGAGCTCATAATCTCAAGCAACAAGACCATCGACGCCCGCGGCTTCAATGTCCACATAGCCTTCGGCGCAGGGCTCACTATTCAATTCGTGCATAATATCATCATCCATGGCCTTCATATCCATGACATTATTTCCAAGTCCGGTGGAATGATTAGAGATGCATTTGATCATTATGGGTTCCGAACACAAAGCGATGGCGATGGTATTTCAATCTTTGGGAGCTCTCATGTTTGGATCGATCATGTTTCAATGTACAATTGTCAAGACGGGTTAATTGATGCCATTATGGCTTCCACTGCCATTACAATCTCCAATAGTCATTTCACTCACCATAACGAGGTTATGTTATTCGGAGCTAGTGATAGCTATAAGGAAGATTCTATAATGCAAATAACCCTTGCATTCAACCATTTTGGGAGGGGATTGGTGCAAAGAATGCCAAGGTGTAGATTTGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGCTTATGTATGCCATTGGGGGCAGCCAGCACCCCACCATTGTTAGCCAAGGGAACCGTTTCATTGCCCCTCCGAATCCGAGCGCGAAACAGATAACGAAGAGAGAGTATGCCGATGAGTCCGAATGGAAGAATTGGTCATGGCGGTCGGAGGGAGATTTGATGATCAACGGGGCGTACTTTGTTCCGGCCGGGGATCAAACCAAGGGGAAGAAGGGCGAATTCTCAAGATATGATATGATTAAATTCAAGCCAGGAGCCTACGTGAAAAGGCTTACACGCTTCGCTGGAACACTTGAGTGTCAAGTAGGCAAGCCATGCTAA 1395 47.1 MIPFRALFLCSLLFVVVCADSDANADLEVDKTPDVEVDKINVTDTDKGIDLEKADEYWQKRAAEAHKAAQKAFNPDPDSVADNFNTAVGQEIVNSNNSRRSLRRYSGPCLATNPIDRCWRCDPNWDKNRRKLAECPLGFGHQTIGGKRGPIYVVTDASDENLVDPKPGTLRHAVVQNGPRWIIFGRSMIIRLSQELIISSNKTIDARGFNVHIAFGAGLTIQFVHNIIIHGLHIHDIISKSGGMIRDAFDHYGFRTQSDGDGISIFGSSHVWIDHVSMYNCQDGLIDAIMASTAITISNSHFTHHNEVMLFGASDSYKEDSIMQITLAFNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPSAKQITKREYADESEWKNWSWRSEGDLMINGAYFVPAGDQTKGKKGEFSRYDMIKFKPGAYVKRLTRFAGTLECQVGKPC 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4119676 4121608 + Cp4.1LG07g05740.1 Cpe07g00605 472412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00605 464 Gene3D - 112 457 IPR012334 -
Cpe07g00605 464 SUPERFAMILY Pectin lyase-like 113 455 IPR011050 -
Cpe07g00605 464 PANTHER PECTATE LYASE 18-RELATED 52 464 IPR045032 GO:0030570
Cpe07g00605 464 SMART amb_all 187 384 IPR002022 -
Cpe07g00605 464 Pfam Pectate lyase 198 378 IPR002022 -
Cpe07g00605 464 Pfam Pectate lyase, N terminus 54 102 IPR007524 GO:0030570
Cpe07g00605 464 PRINTS Pollen allergen Amb family signature 135 152 IPR018082 -
Cpe07g00605 464 PRINTS Pollen allergen Amb family signature 159 184 IPR018082 -
Cpe07g00605 464 PRINTS Pollen allergen Amb family signature 195 211 IPR018082 -
Cpe07g00605 464 PRINTS Pollen allergen Amb family signature 259 280 IPR018082 -
Cpe07g00605 464 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Cpe07g00605 464 PRINTS Pollen allergen Amb family signature 361 380 IPR018082 -
Cpe07g00605 464 PRINTS Pollen allergen Amb family signature 403 427 IPR018082 -
Cpe07g00605 464 PRINTS Pollen allergen Amb family signature 435 458 IPR018082 -
Cpe07g00605 464 PANTHER PECTATE LYASE 52 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00876 Cpe-Chr2:6145392 Cpe07g00605 Cpe-Chr7:4119676 0 dispersed
Cpe03g00524 Cpe-Chr3:3085060 Cpe07g00605 Cpe-Chr7:4119676 0 dispersed
Cpe04g00074 Cpe-Chr4:715832 Cpe07g00605 Cpe-Chr7:4119676 0 dispersed
Cpe07g00605 Cpe-Chr7:4119676 Cpe09g01067 Cpe-Chr9:9286487 0 dispersed
Cpe07g00605 Cpe-Chr7:4119676 Cpe01g01447 Cpe-Chr1:8663789 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00605 K01728 - csv:101217922 705.286