Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00606 ATGGCTTCCCTGTCTCACTCAGCGCTCAGAATTTTGTCAACTGCGCGATGGAATTCTTCCAAACCTTCTTCTTCACTGCCCATTTCTAACAATTTCTTTTCTCTTCTTCGTAAATCTTCATCGCTTCCTTGTTGCCGCCATTCCAACTCTGGCGGCACTCGATTGTTCTCGATCATGGCCACCGCTAAACCTGGAAATCCACCGCAGCAATCACAATCACGGATTAAGGGAGCTGAATCCTTTCTTAGGAATGTTTTAGCGAGCATGGAGGCAGTTTATCTTAATCGCAATCCCTCAGCAAAGGCCATATTGGAACTGGTTCGATCCGTCGATAATGATAAGATTTGTTATGATCATCTTGCGTTTAGAACTTTTGGGACGGATGGCCACGGCATTGATTCATTAGCAAACTTTTTTCTGGATTTTGGATATACACGACAAGAAGAATTATCTTTCCCAGCCAAAAAGTTAAAAGCATTTTGGTTTTCTCCACCGCCCAATTCTGATGCAGCTTATGATGGTGATGGGATTCATGGACCTCTACCAAGAGTGTTCATATCAGAGCTTCTTGTGGATCTGATGAGCCCACAAACTCAGGATATAATCAGAAAATACACTGAAAGTTCTCACGAGGGAAAGAAGCATGCTGCTCTTGCAAGTGCTCTAGGTTCCTTGACATGGGAAAAGCCTTCACATTCTGAGTTTGTCCAACTAGCGAGAGAGAGCGAATATGCCGCTTGGAGTCTTGTGAACGGTTATGCAGTTAATCACGTGACTATTTCGACCCATCGGCTGAAATCTCATCTTAGAAATATCAAAAACCTCAATGAGTTCATAGAAGAGAATGGTTATAAACTGAATTCTGAAGGTGGAGTTTTGAAAGTAAGCCCAGATGGTCTTCTACTGCAAAGCTCGACCCTCGCCGATTCAGTTTCTTTTGAATTTTCTGATGGCATTACTACCACAGTCCCCTGCTCATACATCGAGTTTGCTGAGCGTCTGGTCCTGCCTCAGTTCAAACATCTTCCAGAAACAGAGGTGAAAGAGCAGCACAGAAGGGATGGATTTGAAGTTGGAAATGCTGATAAGATCTTTGAAAGTACATCCAAACAGCAGCAAACGGGAAAGGCTTGA 1134 43.47 MASLSHSALRILSTARWNSSKPSSSLPISNNFFSLLRKSSSLPCCRHSNSGGTRLFSIMATAKPGNPPQQSQSRIKGAESFLRNVLASMEAVYLNRNPSAKAILELVRSVDNDKICYDHLAFRTFGTDGHGIDSLANFFLDFGYTRQEELSFPAKKLKAFWFSPPPNSDAAYDGDGIHGPLPRVFISELLVDLMSPQTQDIIRKYTESSHEGKKHAALASALGSLTWEKPSHSEFVQLARESEYAAWSLVNGYAVNHVTISTHRLKSHLRNIKNLNEFIEENGYKLNSEGGVLKVSPDGLLLQSSTLADSVSFEFSDGITTTVPCSYIEFAERLVLPQFKHLPETEVKEQHRRDGFEVGNADKIFESTSKQQQTGKA 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4143844 4147148 - Cp4.1LG07g05610.1 Cpe07g00606 472413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00606 377 Pfam Domain of unknown function (DUF1338) 81 368 IPR009770 -
Cpe07g00606 377 Gene3D - 46 370 - -
Cpe07g00606 377 MobiDBLite consensus disorder prediction 358 377 - -
Cpe07g00606 377 PANTHER - 23 374 - -
Cpe07g00606 377 CDD VOC_like 82 361 - -
Cpe07g00606 377 SMART DUF1338_2 82 369 IPR009770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00606 - - - csv:101218869 567.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g851 Blo01g00416 . Bda01g02252 . Bpe13g00466 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0980 . . . . . . . . . . . . . Bma01g00081 . . . . . . . . . Cpe07g00606 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007841 3 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 4 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00606 Cpe_Chr07 FPKM 0.279439 0.0 0.516994 0.522379 0.339212 0.633126 0.0 0.399644 0.169673 0.417115