Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00608 ATGGGTTTTAAATTTTTGGGAAATGAGATGGATCCACCTACTCTGATGAACCAAGGGTCATTTCCTAATGACGCTAATGCCAATGCGAATGCGACGGCGTACAATCTCTCCGAGATCTGGCAGTTCCCAATTAATGGCGGAACTGGCGTTGAGGAATCTGGAGGTGGGCTTGGATTGAGGATGGCTCAGTTTGCTCATAATTTGGGGCAGTTTGGAGAGATTTCCATGGAGAATCCAGAAGTTTCGCGCGGTGATCCAGTGAGTCAGAGAGTAGTGGGTCATGGCCATGGCGGTTCCAAGAAGCGGCGTGATGCAGAGCTCGATTCGGCTAAGGCTAGTTCCACCAGTAATGGCAACAATGGCAATAGCGGCGGGGCGAATGTCTCTGCTGGAAAACGCCTTAAAACAGCAGCTTGTAGAGATGATAATCACGCATTTAAAACAGAAGCAGAACCCAGATCTGGCAAGGCCGAGTGTAACTCCCAGCCCCCACCAGAACAACCGAAACAGGATTACATTCATGTGCGAGCAAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCTGAACGGGCTAGAAGAGAAAAGATAAGTGACAGAATGAAAATTCTTCAGGATTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCGCTTCAGCACCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCCAGAGTTAGTCCTGGCATTGAAGTGTTTCCTCCTAAAGATTATGGTCAGCAGACATTCGATACAACTGGTGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCAGCCGTGGCCCATCGCCAGAATGGCTACACATGCAGATCGGTGGGGGGTTCGAAAGAACGACATAG 912 47.37 MGFKFLGNEMDPPTLMNQGSFPNDANANANATAYNLSEIWQFPINGGTGVEESGGGLGLRMAQFAHNLGQFGEISMENPEVSRGDPVSQRVVGHGHGGSKKRRDAELDSAKASSTSNGNNGNSGGANVSAGKRLKTAACRDDNHAFKTEAEPRSGKAECNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRVSPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSSRGPSPEWLHMQIGGGFERTT 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4169450 4172263 + Cp4.1LG07g05660.1 Cpe07g00608 472415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00608 303 Coils Coil 228 248 - -
Cpe07g00608 303 Gene3D - 178 251 IPR036638 GO:0046983
Cpe07g00608 303 MobiDBLite consensus disorder prediction 77 129 - -
Cpe07g00608 303 MobiDBLite consensus disorder prediction 145 169 - -
Cpe07g00608 303 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 10 303 IPR024097 GO:0006355
Cpe07g00608 303 SMART finulus 187 237 IPR011598 GO:0046983
Cpe07g00608 303 PANTHER BNAC05G07950D PROTEIN 10 303 - -
Cpe07g00608 303 MobiDBLite consensus disorder prediction 110 129 - -
Cpe07g00608 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 248 IPR036638 GO:0046983
Cpe07g00608 303 Pfam Helix-loop-helix DNA-binding domain 185 232 IPR011598 GO:0046983
Cpe07g00608 303 CDD bHLH_AtBPE_like 171 256 - -
Cpe07g00608 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 231 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01526 Cpe-Chr4:12000006 Cpe07g00608 Cpe-Chr7:4169450 1.12E-92 dispersed
Cpe07g00608 Cpe-Chr7:4169450 Cpe18g00815 Cpe-Chr18:7580336 1.62E-95 dispersed
Cpe11g00764 Cpe-Chr11:6128187 Cpe07g00608 Cpe-Chr7:4169450 1.24E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49766 PF00010 HLH 1.20E-08 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00608 - - csv:101209222 436.032