Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe07g00608 | ATGGGTTTTAAATTTTTGGGAAATGAGATGGATCCACCTACTCTGATGAACCAAGGGTCATTTCCTAATGACGCTAATGCCAATGCGAATGCGACGGCGTACAATCTCTCCGAGATCTGGCAGTTCCCAATTAATGGCGGAACTGGCGTTGAGGAATCTGGAGGTGGGCTTGGATTGAGGATGGCTCAGTTTGCTCATAATTTGGGGCAGTTTGGAGAGATTTCCATGGAGAATCCAGAAGTTTCGCGCGGTGATCCAGTGAGTCAGAGAGTAGTGGGTCATGGCCATGGCGGTTCCAAGAAGCGGCGTGATGCAGAGCTCGATTCGGCTAAGGCTAGTTCCACCAGTAATGGCAACAATGGCAATAGCGGCGGGGCGAATGTCTCTGCTGGAAAACGCCTTAAAACAGCAGCTTGTAGAGATGATAATCACGCATTTAAAACAGAAGCAGAACCCAGATCTGGCAAGGCCGAGTGTAACTCCCAGCCCCCACCAGAACAACCGAAACAGGATTACATTCATGTGCGAGCAAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCTGAACGGGCTAGAAGAGAAAAGATAAGTGACAGAATGAAAATTCTTCAGGATTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCGCTTCAGCACCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCCAGAGTTAGTCCTGGCATTGAAGTGTTTCCTCCTAAAGATTATGGTCAGCAGACATTCGATACAACTGGTGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCAGCCGTGGCCCATCGCCAGAATGGCTACACATGCAGATCGGTGGGGGGTTCGAAAGAACGACATAG | 912 | 47.37 | MGFKFLGNEMDPPTLMNQGSFPNDANANANATAYNLSEIWQFPINGGTGVEESGGGLGLRMAQFAHNLGQFGEISMENPEVSRGDPVSQRVVGHGHGGSKKRRDAELDSAKASSTSNGNNGNSGGANVSAGKRLKTAACRDDNHAFKTEAEPRSGKAECNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRVSPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSSRGPSPEWLHMQIGGGFERTT | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4169450 | 4172263 | + | Cp4.1LG07g05660.1 | Cpe07g00608 | 472415 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe07g00608 | 303 | Coils | Coil | 228 | 248 | - | - | |
Cpe07g00608 | 303 | Gene3D | - | 178 | 251 | IPR036638 | GO:0046983 | |
Cpe07g00608 | 303 | MobiDBLite | consensus disorder prediction | 77 | 129 | - | - | |
Cpe07g00608 | 303 | MobiDBLite | consensus disorder prediction | 145 | 169 | - | - | |
Cpe07g00608 | 303 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 10 | 303 | IPR024097 | GO:0006355 | |
Cpe07g00608 | 303 | SMART | finulus | 187 | 237 | IPR011598 | GO:0046983 | |
Cpe07g00608 | 303 | PANTHER | BNAC05G07950D PROTEIN | 10 | 303 | - | - | |
Cpe07g00608 | 303 | MobiDBLite | consensus disorder prediction | 110 | 129 | - | - | |
Cpe07g00608 | 303 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 179 | 248 | IPR036638 | GO:0046983 | |
Cpe07g00608 | 303 | Pfam | Helix-loop-helix DNA-binding domain | 185 | 232 | IPR011598 | GO:0046983 | |
Cpe07g00608 | 303 | CDD | bHLH_AtBPE_like | 171 | 256 | - | - | |
Cpe07g00608 | 303 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 181 | 231 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01526 | Cpe-Chr4:12000006 | Cpe07g00608 | Cpe-Chr7:4169450 | 1.12E-92 | dispersed | |
Cpe07g00608 | Cpe-Chr7:4169450 | Cpe18g00815 | Cpe-Chr18:7580336 | 1.62E-95 | dispersed | |
Cpe11g00764 | Cpe-Chr11:6128187 | Cpe07g00608 | Cpe-Chr7:4169450 | 1.24E-147 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49766 | PF00010 | HLH | 1.20E-08 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe07g00608 | - | - | csv:101209222 | 436.032 |