Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00609 ATGGGAACAGAAACAAGAACAAGAACGAGAACAAAGATGTCGTCGAGTAGACCGAGCGAGTCCACAAACACAGGAGGATCCTCCTCCTCCTCTTCACAATCAAGACACACTTCAAGAATTCTCACTCAAACCTCCATAGATGCAAAGCTCCACTCCCACTTCCAACACTCCACTTCTTCATTCGACTACTCTACTTCAATCCATCTCACAGCCAACCCACCATCAACCACCACCACCCCCACCACCACCGCCTACCTCCACCACATCCAACGCTCCAACCTCATCCAACCCTTCGGCTGCCTCATAGCCCTCCACCCAACCACCCACAAACTCATCGCCTTCAGCCAAAACGCCCCTGAATTCCTCACCACAGTCTCCCACACCGTCCCCACCATCTCCGACCGCCCCGTCCTCGCCTTCGGCACCACCCTCCATTCCATCTTCACCCCTCCCACCGCCACAGCCCTCCTCAAAGCTCTAGCCTTTCCCGACGTCACTCTCCTCAACCCCATTCTCGTCCACTCCAAATCCTCACAAAAACCCTTCTACGCCATTCTCCACCGTGTCACCGGTAGCCTCATCATCGACTTCGAACCCGTCAACCCCGACGAAGTCCCCGTCACCGCAGCCGGTGCTCTCCAATCATATAAACTCGCAGCCAAAGCCATCACTCGCCTCCAAGCTCTCCCTAGTGGAAGCATGGCCAGGCTTTGTGACACCATGGTTCAAGAAGTGTTTGAACTCACAGGATATGATCGAGTCATGGCATATAAATTCCATGATGATGATCATGGGGAGGTGTTCTCTGAGGTTACAAAGCCTGGACTTGACCCATATCTTGGATTGCATTATCCAGCCACTGACATCCCACAAGCTGCAAGGTTCTTATTCATGAAGAACAAGGTTAGAATGATTGTGGACTGCAAAGCCAAACATGTCAAGGTGATTCAAGACCCAAATCTTGAGTTTGATTTGACATTATGTGGGTCAACATTGAGAGCTCCTCATAGTTGCCATTTACAATACATGGAGAATATGGATTCAATTGCATCTTTAGTTATGGCAATTGTGGTGAATGAGGAAGAACATGAAGAACAATTTGATCATAAGAACAAGAGAAAAAGATTATGGGGTTTGGTGGTTTGTCATAACACAACTCCAAGATTTGTTCCATTTCCTCTTAGATATGCATGTGAGTTTCTAGCTCAAGTGTTTGCAATTCATGTCAACAAAGAATTGGAATTGGAGAATCAAATTTTGGAGAAGAACATCTTAAGAACTCAAACGCTTTTGTGTGATATGTTGATGCGTGATGCACCATTAGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTGAAGTCAGATGGGGCTGCATTGTTGTACAATGATAAGGTATGGAGATTAGGGATGACTCCTAATGATTTTGAGCTTCATGATATTGCTTCATGGATTTTGGAGTATCATGTGGATTCGACTGGATTGAGTACGGATAGCTTGTACGATGCGGGGTATCACGGCGCGGTTGCTCTAGGAGACGGCGTGTGTGGGATGGCGGCGGTGAGGCTAGGTTTCAACGACATGATTTTTTGGTTCCGATCGCATGCTGCATCGGAGATTAGGTGGGGCGGGGCGAAGCATGAGGCGGGTGAGAAGGATGATGGAAGGAGAATGCATCCTAGGTCATCTTTCAAGGCTTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCTATTCATTCTTTGCAACTTATACTAAGAAACACTTATAAAGATAAAGAGATTAATAGAAGTTCAATACAATCAACACTTAGTGACCTGAAGATTGATGGGAGGCAAGAAATTGAATCAGTGACATGTGAGATGGTGAGGTTGATTGAAACGGCTAGTGTTCCAATTTTGGCTGTTGATGTGGATGGGCTTGTTAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGAATTTGTGTTGATAAGGCTATTGGCAAGCATTTGTTGACATTGGTGGAAGATTCTTCATTGGAAACTATAAAAACACAAGGCTCACACATGGAATCAAGCTCAATCAGCCTAATAGTAAATGCATGTGCAAGCAAAGACTTATGTGAGAACGTAGTGGGAGTATGCTTCGTAGCACAAGACATCACACATGAAAAGAAAGTAATGGACAAGTTCACAAAATTACAAGGCGATTACAAAGCCATAGTACAAAACCCCAACCCACTAATCCCTCCAATATTTGGGGTAGACGAATTTGGTTGGTGCACAGAGTGGAACTTAGCAATGGAAAATCTAAGTGGATGGTCAAGAGAAGAAGTGGTCAACAAGATGCTTTTGGGGGAAGTTTTTGGGTCATGCTGCCATCTAAAGAACCAAGAAGCCTTTGTGAATCTTGGGATTGTTTTGAACAATGCCATGAGTGGCCAAGATTCTGATAAGATATCATTTGGGTTCTTTGGTAGAAATGGGATGTTTGTGGAATGTCTTGTTTGTGTGAATAAGATAATGGATAGAGATGGGGAAGTGATTGGGGTTTTTTGCTTCTTGCAGCTTGCTAGCCAAGAGCTGCAACAAGCTTTGAATGTTCAAAAGTTGTGTGAGAGAACGGCTTTGAAAAGGTTGAAGGCTTTGGGATATATTAAGAGGCAGATCCAAAATCCTCTTTGTGGGATTGTTTTTACGAGTAAAATGTTGGAGAGCTCTCAGTTGGGTGATGAACAGAACCAGCTTTTGCTTAATAGTGGTGATTGTCAAAGGCAGATCTTTAAGGTTCTTCATGATTCGGATGATCTTGATAAGATTATTGAAGGCTTCATTGATTTAGAAATGGTTGAGTTCTCATTACATGAAGCATTAGTGGTATCAATTAGTCAAGTAATGATGAAGAGCAAAGGCAAAGGTATCCAAATAGTAAACGAGGTAGCAGAAGAGATCATGTCCGAGACCTTATATGGAGACAGTTTGAGACTTCAACAAGTAATGGCTGATTTCTTGTTGATATCAGTAAATTACGCACCAACAGGAAGCAGCCTTATGCTTTCAACAAAGTTGACAAAGGATCAATCAGGGAAGTCAGTGAATCTTGTGCATGTGGAGTTCAGGATAACATATGTCGGTGGTGGCATGCCAGAATCATTGTTGAATGAGATGTTTGGGAACGATGAGGAGGCGTCTGATGAAGGTTTTAGCCTTCTCGTGAGTAGAAAGTTGGTGAAGTTGATGAATGGAGAGGTGAGATATGTGAGGGAAGCAGCCAACTCAACCTTCATCATAACACTTCAGCTTGCTGCAGCTCATAAATAG 3327 43.94 MGTETRTRTRTKMSSSRPSESTNTGGSSSSSSQSRHTSRILTQTSIDAKLHSHFQHSTSSFDYSTSIHLTANPPSTTTTPTTTAYLHHIQRSNLIQPFGCLIALHPTTHKLIAFSQNAPEFLTTVSHTVPTISDRPVLAFGTTLHSIFTPPTATALLKALAFPDVTLLNPILVHSKSSQKPFYAILHRVTGSLIIDFEPVNPDEVPVTAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMIVDCKAKHVKVIQDPNLEFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEHEEQFDHKNKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYNDKVWRLGMTPNDFELHDIASWILEYHVDSTGLSTDSLYDAGYHGAVALGDGVCGMAAVRLGFNDMIFWFRSHAASEIRWGGAKHEAGEKDDGRRMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDKEINRSSIQSTLSDLKIDGRQEIESVTCEMVRLIETASVPILAVDVDGLVNGWNSKIAELTGICVDKAIGKHLLTLVEDSSLETIKTQGSHMESSSISLIVNACASKDLCENVVGVCFVAQDITHEKKVMDKFTKLQGDYKAIVQNPNPLIPPIFGVDEFGWCTEWNLAMENLSGWSREEVVNKMLLGEVFGSCCHLKNQEAFVNLGIVLNNAMSGQDSDKISFGFFGRNGMFVECLVCVNKIMDRDGEVIGVFCFLQLASQELQQALNVQKLCERTALKRLKALGYIKRQIQNPLCGIVFTSKMLESSQLGDEQNQLLLNSGDCQRQIFKVLHDSDDLDKIIEGFIDLEMVEFSLHEALVVSISQVMMKSKGKGIQIVNEVAEEIMSETLYGDSLRLQQVMADFLLISVNYAPTGSSLMLSTKLTKDQSGKSVNLVHVEFRITYVGGGMPESLLNEMFGNDEEASDEGFSLLVSRKLVKLMNGEVRYVREAANSTFIITLQLAAAHK 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4182080 4188809 + Cp4.1LG07g05650.1 Cpe07g00609 472416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00609 1108 Pfam PAS fold 629 697 IPR013767 GO:0006355
Cpe07g00609 1108 Pfam PAS fold 739 858 IPR013767 GO:0006355
Cpe07g00609 1108 SUPERFAMILY GAF domain-like 213 410 - -
Cpe07g00609 1108 SUPERFAMILY GAF domain-like 421 598 - -
Cpe07g00609 1108 Pfam PAS fold 84 200 IPR013654 GO:0006355
Cpe07g00609 1108 ProSitePatterns Phytochrome chromophore attachment site signature. 333 342 IPR013516 -
Cpe07g00609 1108 ProSiteProfiles PAS repeat profile. 739 817 IPR000014 -
Cpe07g00609 1108 PIRSF Phytochrome_conventional 16 1108 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cpe07g00609 1108 Coils Coil 410 430 - -
Cpe07g00609 1108 SMART pas_2 628 694 IPR000014 -
Cpe07g00609 1108 SMART pas_2 738 808 IPR000014 -
Cpe07g00609 1108 SMART HKATPase_4 993 1105 IPR003594 -
Cpe07g00609 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 203 IPR035965 -
Cpe07g00609 1108 Gene3D - 945 1107 IPR036890 -
Cpe07g00609 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 632 717 IPR035965 -
Cpe07g00609 1108 CDD PAS 637 688 IPR000014 -
Cpe07g00609 1108 CDD PAS 750 858 IPR000014 -
Cpe07g00609 1108 Gene3D - 214 574 IPR029016 -
Cpe07g00609 1108 Pfam GAF domain 234 413 IPR003018 GO:0005515
Cpe07g00609 1108 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 233 403 IPR016132 -
Cpe07g00609 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 753 856 IPR035965 -
Cpe07g00609 1108 Gene3D PAS domain 620 731 - -
Cpe07g00609 1108 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 993 1103 IPR003594 -
Cpe07g00609 1108 Gene3D PAS domain 752 865 - -
Cpe07g00609 1108 MobiDBLite consensus disorder prediction 14 39 - -
Cpe07g00609 1108 SMART gaf_1 233 423 IPR003018 GO:0005515
Cpe07g00609 1108 Pfam Phytochrome region 426 601 IPR013515 GO:0006355|GO:0009584
Cpe07g00609 1108 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1106 - -
Cpe07g00609 1108 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 938 1101 IPR036890 -
Cpe07g00609 1108 Gene3D PAS domain 88 336 - -
Cpe07g00609 1108 Gene3D - 418 591 IPR043150 -
Cpe07g00609 1108 PRINTS Phytochrome signature 248 267 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 443 463 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 721 741 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 148 170 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 561 579 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 701 718 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 528 547 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 333 354 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 ProSiteProfiles Histidine kinase domain profile. 887 1105 IPR005467 -
Cpe07g00609 1108 MobiDBLite consensus disorder prediction 1 39 - -
Cpe07g00609 1108 ProSiteProfiles PAS repeat profile. 626 686 IPR000014 -
Cpe07g00609 1108 PANTHER PHYTOCHROME A 27 1106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00609 K12120 PHYA; phytochrome A - csv:101219585 1778.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00609 Cpe-Chr7:4182080 Cpe15g00685 Cpe-Chr15:7435689 0 dispersed
Cpe11g00763 Cpe-Chr11:6110050 Cpe07g00609 Cpe-Chr7:4182080 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g01030 . 5 1148 Histidine Kinase Gene Family AT2G17820 63.4 0.0e+00 1401.7
Cpe08g01314 . 5 1195 Histidine Kinase Gene Family AT2G17820 61.5 0.0e+00 1370.1
Cpe01g00013 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.6 0.0e+00 1326.2
Cpe13g00429 CCT 5 964 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1307.7
Cpe01g01858 CCT 23 1023 Histidine Kinase Gene Family AT2G01830 69.1 0.0e+00 1302.0
Cpe16g00390 . 301 1244 Histidine Kinase Gene Family AT2G01830 52.9 1.2e-269 926.8
Cpe04g00676 . 280 1205 Histidine Kinase Gene Family AT2G01830 52.8 4.0e-268 921.8
Cpe01g00966 . 99 1016 Histidine Kinase Gene Family AT2G01830 52.0 7.5e-259 891.0
Cpe02g00308 CCT 1 998 Histidine Kinase Gene Family AT5G10720 57.2 1.2e-292 1003.0
Cpe06g00274 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.1 6.1e-289 990.7
Cpe11g00763 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.5 0.0e+00 1820.1
Cpe07g00609 . 35 1108 Histidine Kinase Gene Family AT1G09570 70.5 0.0e+00 1575.5
Cpe15g00685 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1206.0
Cpe03g01327 CST 443 1507 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1178.3
Cpe08g00149 CST 31 1111 Histidine Kinase Gene Family AT1G09570 52.2 0.0e+00 1138.6
Cpe03g01327 CST 421 1448 Histidine Kinase Gene Family AT2G18790 77.5 0.0e+00 1625.1
Cpe08g00149 CST 30 1052 Histidine Kinase Gene Family AT2G18790 76.9 0.0e+00 1594.3
Cpe20g00493 CCT 31 1050 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1228.8
Cpe09g00775 CCT 31 1025 Histidine Kinase Gene Family AT2G18790 60.2 0.0e+00 1212.2
Cpe11g00763 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cpe15g00685 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1076.6
Cpe07g00609 . 38 1042 Histidine Kinase Gene Family AT2G18790 50.3 3.0e-298 1021.9
Cpe15g00685 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1359.0
Cpe03g01327 CST 429 1509 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1124.4
Cpe11g00763 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1110.5
Cpe08g00149 CST 31 1113 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1099.7
Cpe03g01327 CST 438 1509 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1668.7
Cpe08g00149 CST 34 1113 Histidine Kinase Gene Family AT4G16250 73.5 0.0e+00 1627.1
Cpe20g00493 CCT 32 1112 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1268.8
Cpe09g00775 CCT 38 1081 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1230.7
Cpe11g00763 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1135.9
Cpe15g00685 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1106.7
Cpe07g00609 . 37 1103 Histidine Kinase Gene Family AT4G16250 50.5 7.1e-311 1063.9
Cpe20g00493 CCT 15 1126 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1369.8
Cpe09g00775 CCT 15 1098 Histidine Kinase Gene Family AT4G18130 60.2 0.0e+00 1308.1
Cpe03g01327 CST 446 1507 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1250.3
Cpe08g00149 CST 42 1111 Histidine Kinase Gene Family AT4G18130 56.8 0.0e+00 1233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00609 Cpe_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0