Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00609 ATGGGAACAGAAACAAGAACAAGAACGAGAACAAAGATGTCGTCGAGTAGACCGAGCGAGTCCACAAACACAGGAGGATCCTCCTCCTCCTCTTCACAATCAAGACACACTTCAAGAATTCTCACTCAAACCTCCATAGATGCAAAGCTCCACTCCCACTTCCAACACTCCACTTCTTCATTCGACTACTCTACTTCAATCCATCTCACAGCCAACCCACCATCAACCACCACCACCCCCACCACCACCGCCTACCTCCACCACATCCAACGCTCCAACCTCATCCAACCCTTCGGCTGCCTCATAGCCCTCCACCCAACCACCCACAAACTCATCGCCTTCAGCCAAAACGCCCCTGAATTCCTCACCACAGTCTCCCACACCGTCCCCACCATCTCCGACCGCCCCGTCCTCGCCTTCGGCACCACCCTCCATTCCATCTTCACCCCTCCCACCGCCACAGCCCTCCTCAAAGCTCTAGCCTTTCCCGACGTCACTCTCCTCAACCCCATTCTCGTCCACTCCAAATCCTCACAAAAACCCTTCTACGCCATTCTCCACCGTGTCACCGGTAGCCTCATCATCGACTTCGAACCCGTCAACCCCGACGAAGTCCCCGTCACCGCAGCCGGTGCTCTCCAATCATATAAACTCGCAGCCAAAGCCATCACTCGCCTCCAAGCTCTCCCTAGTGGAAGCATGGCCAGGCTTTGTGACACCATGGTTCAAGAAGTGTTTGAACTCACAGGATATGATCGAGTCATGGCATATAAATTCCATGATGATGATCATGGGGAGGTGTTCTCTGAGGTTACAAAGCCTGGACTTGACCCATATCTTGGATTGCATTATCCAGCCACTGACATCCCACAAGCTGCAAGGTTCTTATTCATGAAGAACAAGGTTAGAATGATTGTGGACTGCAAAGCCAAACATGTCAAGGTGATTCAAGACCCAAATCTTGAGTTTGATTTGACATTATGTGGGTCAACATTGAGAGCTCCTCATAGTTGCCATTTACAATACATGGAGAATATGGATTCAATTGCATCTTTAGTTATGGCAATTGTGGTGAATGAGGAAGAACATGAAGAACAATTTGATCATAAGAACAAGAGAAAAAGATTATGGGGTTTGGTGGTTTGTCATAACACAACTCCAAGATTTGTTCCATTTCCTCTTAGATATGCATGTGAGTTTCTAGCTCAAGTGTTTGCAATTCATGTCAACAAAGAATTGGAATTGGAGAATCAAATTTTGGAGAAGAACATCTTAAGAACTCAAACGCTTTTGTGTGATATGTTGATGCGTGATGCACCATTAGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTGAAGTCAGATGGGGCTGCATTGTTGTACAATGATAAGGTATGGAGATTAGGGATGACTCCTAATGATTTTGAGCTTCATGATATTGCTTCATGGATTTTGGAGTATCATGTGGATTCGACTGGATTGAGTACGGATAGCTTGTACGATGCGGGGTATCACGGCGCGGTTGCTCTAGGAGACGGCGTGTGTGGGATGGCGGCGGTGAGGCTAGGTTTCAACGACATGATTTTTTGGTTCCGATCGCATGCTGCATCGGAGATTAGGTGGGGCGGGGCGAAGCATGAGGCGGGTGAGAAGGATGATGGAAGGAGAATGCATCCTAGGTCATCTTTCAAGGCTTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCTATTCATTCTTTGCAACTTATACTAAGAAACACTTATAAAGATAAAGAGATTAATAGAAGTTCAATACAATCAACACTTAGTGACCTGAAGATTGATGGGAGGCAAGAAATTGAATCAGTGACATGTGAGATGGTGAGGTTGATTGAAACGGCTAGTGTTCCAATTTTGGCTGTTGATGTGGATGGGCTTGTTAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGAATTTGTGTTGATAAGGCTATTGGCAAGCATTTGTTGACATTGGTGGAAGATTCTTCATTGGAAACTATAAAAACACAAGGCTCACACATGGAATCAAGCTCAATCAGCCTAATAGTAAATGCATGTGCAAGCAAAGACTTATGTGAGAACGTAGTGGGAGTATGCTTCGTAGCACAAGACATCACACATGAAAAGAAAGTAATGGACAAGTTCACAAAATTACAAGGCGATTACAAAGCCATAGTACAAAACCCCAACCCACTAATCCCTCCAATATTTGGGGTAGACGAATTTGGTTGGTGCACAGAGTGGAACTTAGCAATGGAAAATCTAAGTGGATGGTCAAGAGAAGAAGTGGTCAACAAGATGCTTTTGGGGGAAGTTTTTGGGTCATGCTGCCATCTAAAGAACCAAGAAGCCTTTGTGAATCTTGGGATTGTTTTGAACAATGCCATGAGTGGCCAAGATTCTGATAAGATATCATTTGGGTTCTTTGGTAGAAATGGGATGTTTGTGGAATGTCTTGTTTGTGTGAATAAGATAATGGATAGAGATGGGGAAGTGATTGGGGTTTTTTGCTTCTTGCAGCTTGCTAGCCAAGAGCTGCAACAAGCTTTGAATGTTCAAAAGTTGTGTGAGAGAACGGCTTTGAAAAGGTTGAAGGCTTTGGGATATATTAAGAGGCAGATCCAAAATCCTCTTTGTGGGATTGTTTTTACGAGTAAAATGTTGGAGAGCTCTCAGTTGGGTGATGAACAGAACCAGCTTTTGCTTAATAGTGGTGATTGTCAAAGGCAGATCTTTAAGGTTCTTCATGATTCGGATGATCTTGATAAGATTATTGAAGGCTTCATTGATTTAGAAATGGTTGAGTTCTCATTACATGAAGCATTAGTGGTATCAATTAGTCAAGTAATGATGAAGAGCAAAGGCAAAGGTATCCAAATAGTAAACGAGGTAGCAGAAGAGATCATGTCCGAGACCTTATATGGAGACAGTTTGAGACTTCAACAAGTAATGGCTGATTTCTTGTTGATATCAGTAAATTACGCACCAACAGGAAGCAGCCTTATGCTTTCAACAAAGTTGACAAAGGATCAATCAGGGAAGTCAGTGAATCTTGTGCATGTGGAGTTCAGGATAACATATGTCGGTGGTGGCATGCCAGAATCATTGTTGAATGAGATGTTTGGGAACGATGAGGAGGCGTCTGATGAAGGTTTTAGCCTTCTCGTGAGTAGAAAGTTGGTGAAGTTGATGAATGGAGAGGTGAGATATGTGAGGGAAGCAGCCAACTCAACCTTCATCATAACACTTCAGCTTGCTGCAGCTCATAAATAG 3327 43.94 MGTETRTRTRTKMSSSRPSESTNTGGSSSSSSQSRHTSRILTQTSIDAKLHSHFQHSTSSFDYSTSIHLTANPPSTTTTPTTTAYLHHIQRSNLIQPFGCLIALHPTTHKLIAFSQNAPEFLTTVSHTVPTISDRPVLAFGTTLHSIFTPPTATALLKALAFPDVTLLNPILVHSKSSQKPFYAILHRVTGSLIIDFEPVNPDEVPVTAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMIVDCKAKHVKVIQDPNLEFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEHEEQFDHKNKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYNDKVWRLGMTPNDFELHDIASWILEYHVDSTGLSTDSLYDAGYHGAVALGDGVCGMAAVRLGFNDMIFWFRSHAASEIRWGGAKHEAGEKDDGRRMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDKEINRSSIQSTLSDLKIDGRQEIESVTCEMVRLIETASVPILAVDVDGLVNGWNSKIAELTGICVDKAIGKHLLTLVEDSSLETIKTQGSHMESSSISLIVNACASKDLCENVVGVCFVAQDITHEKKVMDKFTKLQGDYKAIVQNPNPLIPPIFGVDEFGWCTEWNLAMENLSGWSREEVVNKMLLGEVFGSCCHLKNQEAFVNLGIVLNNAMSGQDSDKISFGFFGRNGMFVECLVCVNKIMDRDGEVIGVFCFLQLASQELQQALNVQKLCERTALKRLKALGYIKRQIQNPLCGIVFTSKMLESSQLGDEQNQLLLNSGDCQRQIFKVLHDSDDLDKIIEGFIDLEMVEFSLHEALVVSISQVMMKSKGKGIQIVNEVAEEIMSETLYGDSLRLQQVMADFLLISVNYAPTGSSLMLSTKLTKDQSGKSVNLVHVEFRITYVGGGMPESLLNEMFGNDEEASDEGFSLLVSRKLVKLMNGEVRYVREAANSTFIITLQLAAAHK 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4182080 4188809 + Cp4.1LG07g05650.1 Cpe07g00609 472416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00609 1108 Pfam PAS fold 629 697 IPR013767 GO:0006355
Cpe07g00609 1108 Pfam PAS fold 739 858 IPR013767 GO:0006355
Cpe07g00609 1108 SUPERFAMILY GAF domain-like 213 410 - -
Cpe07g00609 1108 SUPERFAMILY GAF domain-like 421 598 - -
Cpe07g00609 1108 Pfam PAS fold 84 200 IPR013654 GO:0006355
Cpe07g00609 1108 ProSitePatterns Phytochrome chromophore attachment site signature. 333 342 IPR013516 -
Cpe07g00609 1108 ProSiteProfiles PAS repeat profile. 739 817 IPR000014 -
Cpe07g00609 1108 PIRSF Phytochrome_conventional 16 1108 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cpe07g00609 1108 Coils Coil 410 430 - -
Cpe07g00609 1108 SMART pas_2 628 694 IPR000014 -
Cpe07g00609 1108 SMART pas_2 738 808 IPR000014 -
Cpe07g00609 1108 SMART HKATPase_4 993 1105 IPR003594 -
Cpe07g00609 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 203 IPR035965 -
Cpe07g00609 1108 Gene3D - 945 1107 IPR036890 -
Cpe07g00609 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 632 717 IPR035965 -
Cpe07g00609 1108 CDD PAS 637 688 IPR000014 -
Cpe07g00609 1108 CDD PAS 750 858 IPR000014 -
Cpe07g00609 1108 Gene3D - 214 574 IPR029016 -
Cpe07g00609 1108 Pfam GAF domain 234 413 IPR003018 GO:0005515
Cpe07g00609 1108 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 233 403 IPR016132 -
Cpe07g00609 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 753 856 IPR035965 -
Cpe07g00609 1108 Gene3D PAS domain 620 731 - -
Cpe07g00609 1108 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 993 1103 IPR003594 -
Cpe07g00609 1108 Gene3D PAS domain 752 865 - -
Cpe07g00609 1108 MobiDBLite consensus disorder prediction 14 39 - -
Cpe07g00609 1108 SMART gaf_1 233 423 IPR003018 GO:0005515
Cpe07g00609 1108 Pfam Phytochrome region 426 601 IPR013515 GO:0006355|GO:0009584
Cpe07g00609 1108 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1106 - -
Cpe07g00609 1108 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 938 1101 IPR036890 -
Cpe07g00609 1108 Gene3D PAS domain 88 336 - -
Cpe07g00609 1108 Gene3D - 418 591 IPR043150 -
Cpe07g00609 1108 PRINTS Phytochrome signature 248 267 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 443 463 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 721 741 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 148 170 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 561 579 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 701 718 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 528 547 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 PRINTS Phytochrome signature 333 354 IPR001294 GO:0006355|GO:0009584
Cpe07g00609 1108 ProSiteProfiles Histidine kinase domain profile. 887 1105 IPR005467 -
Cpe07g00609 1108 MobiDBLite consensus disorder prediction 1 39 - -
Cpe07g00609 1108 ProSiteProfiles PAS repeat profile. 626 686 IPR000014 -
Cpe07g00609 1108 PANTHER PHYTOCHROME A 27 1106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00609 Cpe-Chr7:4182080 Cpe15g00685 Cpe-Chr15:7435689 0 dispersed
Cpe11g00763 Cpe-Chr11:6110050 Cpe07g00609 Cpe-Chr7:4182080 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00609 K12120 - csv:101219585 1778.45