Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00610 ATGAGAATTCCAAACACGATGCCGTCTCACGCGGATCTGGACCGTCAGATCGAGCATCTCATGGAGTGTAAGCCTCTCTCCGAGGCCGACGTTAAGACGCTTTGTGATCAGGCAAGGACGATATTGGTCGAGGAATGGAACGTTCAGCCGGTCAAGTGCCCCGTCACCGTTTGTGGTGATATTCACGGCCAGTTTTATGATCTTGTCGAACTGTTTCGGATAGGAGGGAATGCTCCTGACACTAATTATCTCTTCATGGGTGATTATGTGGACCGTGGATACTATTCTGTGGAAACCGTTACACTTCTAGTGGCTCTGAAAGTTCGTTATAGAGATAGAATTACAATCTTGAGGGGAAATCATGAGAGCAGGCAAATAACTCAAGTTTACGGATTCTATGACGAATGTTTGAGAAAATATGGAAATGCAAATGTCTGGAAGCACTTTACTGACCTCTTTGATTATTTACCTCTTACAGCTCTAATTGAGAGCCAGGTTTTTTGTTTGCACGGAGGACTTTCACCATCTTTGGATACCTTGGATAACATCAGATCGTTGGACCGAATTCAAGAGGTTCCACATGAGGGACCGATGTGTGATCTCTTATGGTCTGATCCTGATGACCGTTGTGGTTGGGGGATATCTCCTCGCGGTGCTGGATATACTTTTGGGCAGGACATTGCCACCCAATTCAACCACACAAATGGGCTAACACTGATTTCAAGAGCCCACCAACTCGTAATGGAGGGATACAATTGGTGTCAGGACAAGAATGTGGTGACTGTTTTTAGTGCTCCAAATTATTGTTATCGGTGTGGGAATATGGCTGCAATCCTTGAGATTGGGGAGAATATGGATCAAAATTTTCTTCAGTTCGACCCTGCACCACGCCAAATCGAACCCGATACCACACGGAAGACCCCCGATTATTTTTTGTAA 939 45.26 MRIPNTMPSHADLDRQIEHLMECKPLSEADVKTLCDQARTILVEEWNVQPVKCPVTVCGDIHGQFYDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRSLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIATQFNHTNGLTLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4192995 4201780 + Cp4.1LG07g05670.1 Cpe07g00610 472417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00610 312 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 312 - -
Cpe07g00610 312 Gene3D - 5 312 IPR029052 -
Cpe07g00610 312 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Cpe07g00610 312 SUPERFAMILY Metallo-dependent phosphatases 11 299 IPR029052 -
Cpe07g00610 312 Pfam Calcineurin-like phosphoesterase 54 245 IPR004843 GO:0016787
Cpe07g00610 312 CDD MPP_PP2A_PP4_PP6 12 296 - -
Cpe07g00610 312 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 7 312 - -
Cpe07g00610 312 SMART pp2a_7 26 296 IPR006186 GO:0016787
Cpe07g00610 312 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Cpe07g00610 312 PRINTS Serine/threonine phosphatase family signature 180 207 IPR006186 GO:0016787
Cpe07g00610 312 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Cpe07g00610 312 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Cpe07g00610 312 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Cpe07g00610 312 PRINTS Serine/threonine phosphatase family signature 151 177 IPR006186 GO:0016787
Cpe07g00610 312 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00610 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] - csv:101210127 647.506
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01424 Cpe07g00610 CCT
Cpe01g01424 Cpe07g00610 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01424 Cpe-Chr1:8548059 Cpe07g00610 Cpe-Chr7:4192995 0 dispersed
Cpe02g00791 Cpe-Chr2:5058959 Cpe07g00610 Cpe-Chr7:4192995 1.87E-142 dispersed
Cpe07g00610 Cpe-Chr7:4192995 Cpe11g00767 Cpe-Chr11:6155907 0 dispersed
Cpe07g00610 Cpe-Chr7:4192995 Cpe05g00531 Cpe-Chr5:3154021 0 transposed
Cpe07g00610 Cpe-Chr7:4192995 Cpe16g00921 Cpe-Chr16:8540673 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g809 Blo01g00410 Blo16g01139 Bda01g02171 Bda11g01245 Bpe13g00474 . . . Cmo04g01688 . . . . . Sed08g1883 . Cpe01g01424 Bhi07g01649 Tan04g1154 Cmetu10g0911 Lac13g0253 Hepe10g1691 . . Cla05g02498 Cam05g2682 Cec05g2715 Cco05g2750 Clacu05g2685 Cmu05g2539 Cre05g2654 . Cone19ag0992 Cone8ag0631 Cone12ag0613 Lsi04g00498 Csa05g02387 Chy10g00950 Cme10g00475 . . . Bda11g01245 . . Bma01g00073 . . . . Cma04g01610 . Car04g01652 . . Cpe07g00610 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000292 4 4 4 4 5 4 7 4 4 4 4 4 7 4 4 6 4 11 7 4 3 4 4 4 4 4 4 11 3 5 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00610 Cpe_Chr07 FPKM 11.299932 12.954863 42.056183 39.543072 9.782321 8.909973 8.917953 10.92598 11.283737 11.14014