Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00613 ATGGCAATGGCGTCTCTTTCTAAACGTTCGTCTCTTAGTCCGCCTCAGCCAGCGGCCGCCGCGAATCACGATCTCAAGCAACGAGTTATTGCCTGTCTCAACAAGCTTGAGGACCGGGATACACTTGCTATGGCGGCGAATGAGTTGGAATCAATTGCTAAGGCTCTTACATGTGACTCATTCGCGCCATTTCTCTCTTGTATTCATAATACTGATTCGTCGTCGAAATCGCCGGTGAGGAAGCAGTGTGTATACCTTCTTGGTTTTCTTTCTCAGTTTCATGGAGATTCCTTGTCTCCTTTTGTGTCGAAGATGATTTCTACTGTTGTTCGTCGTCTTCGTGATTCAGACTCTACAATCCGATCTGCTTGCGTTGACGCTATGGCTTTAATGTCGTCGCAAATCACGAAGCCGCCATTCTCGGTTTTCTTGAAGCCGTTGATGGAGACGCTTACGCTTGAGCAGGATCTCAATTCGCAGACTGGTTCTGCTCTGTGTCTCGCGGCAGCGGTTGAGGCGGCACCTGATCCAGATGTGTTGCAGCTGCGGAAGAATTTGCCGAGGTTGGGGAAATTGGCGAAGAACGATGGATTTAAGGCGAAGGCTGCGTTGCTGGCGCTGATTGGGAGTATCATTTCTGTTGGTGGTGCGACGAGTCGAAGCGTATTGGACTGGCTGGTGCCGTGCATTGTTGAATTCTTGAGCAATGACGATTGGGCTGTAAGGAAGGCGGCCGCAGAAACTCTCGCGAGAGTGGCCGTCGCTGAAAGGGATTTGGCTGTCGACTACAGATCATCGTGTATTAATTCTTTGGATAGCCGGAGATTTGATAAGATCAAGGTCGTTCGGGAGACGATGAACCAAACTTTGGAGTTATGGAAACAGATACCTGACGCTTCTGGAGACATCTCAACTGATAATGACAATGGCGGATGCTTTCCTCCCATTTCCACATGCCCCCATGAAGACAGTTTACGAACACCATTGAGGAAAACAGTCCCCACTAGCAGGTCCTCTCCAATGGGTGTATCGCGTGTGACTAATAATAAGAAGGTCAGTCCAAAGAACACAGATAAGACTTCAAGCACGCCCATATCTAAGCTGGAACGCCAGAAATCTTGGAAAGTTGAAATTGCAGTATCAAACTCCCCTTCATCAAAAGTTAATTCTGAGAACAATGCTGTTGGGTATGGTTCAGAAAACATAGATTTCCAAGGGAATGGTAGAAGTGGAAATTCCACTTTCAATGCGAAACGAGTTCTTTATAATGATGTGCGTGATGAGAAAGTTAACAAGGCCAGCAATTTGAGATCTGGGTCTCGCGTAGTTCCATTTGATGAGCATGGGGACATTCAGGAGCATGAGAATCGAGACTCGGATGTTACTGCTGACAGCTCAAGTGAAGAAGCTTACGGGAGCTACAAAGATTTTGAAGATATCTCACTCATTCGTGACCAACTTCGTCAGATTGAGAACCAACAATCTAGCCTTCTAAACCTTCTCCAGAGCTTTATTGGGAGTTCTCAGAGCGGTTTGAATTCATTGGAGAAACGAGTACATGGACTGGAGATGGCATTAGATGAAATATCTTACGACTTGGGTTTGTCAAGTGGAAGGGTGACTAATAGCAGCTATGCCGAAAACTCATGTTGCAAGCTGCCCGGTGCAGAATTTTTAAGTTCCAAGTTCTGGAGGCGAGCAGAAGAGCGGCATTCTGGTTCAAAGTTCTGTTCTACAGCACACGTCGCCTCGCCTAACGATCTGCATCATACACTCGAAAGAGACGCCATTGCCGAATCAATTAAGCAAAGTAGGGGAGGATTTGTTATGAATCCGTTGGCCACCATTGATGGTGAACTTAGAGAAAACTTGGGGCAGTATCCAAAAAGATTACTGAAACCTGTAATCCAAGAGAGTGATAGTGTGCCTATTTACAATGCACGTGGAAGTGATTAG 1956 46.47 MAMASLSKRSSLSPPQPAAAANHDLKQRVIACLNKLEDRDTLAMAANELESIAKALTCDSFAPFLSCIHNTDSSSKSPVRKQCVYLLGFLSQFHGDSLSPFVSKMISTVVRRLRDSDSTIRSACVDAMALMSSQITKPPFSVFLKPLMETLTLEQDLNSQTGSALCLAAAVEAAPDPDVLQLRKNLPRLGKLAKNDGFKAKAALLALIGSIISVGGATSRSVLDWLVPCIVEFLSNDDWAVRKAAAETLARVAVAERDLAVDYRSSCINSLDSRRFDKIKVVRETMNQTLELWKQIPDASGDISTDNDNGGCFPPISTCPHEDSLRTPLRKTVPTSRSSPMGVSRVTNNKKVSPKNTDKTSSTPISKLERQKSWKVEIAVSNSPSSKVNSENNAVGYGSENIDFQGNGRSGNSTFNAKRVLYNDVRDEKVNKASNLRSGSRVVPFDEHGDIQEHENRDSDVTADSSSEEAYGSYKDFEDISLIRDQLRQIENQQSSLLNLLQSFIGSSQSGLNSLEKRVHGLEMALDEISYDLGLSSGRVTNSSYAENSCCKLPGAEFLSSKFWRRAEERHSGSKFCSTAHVASPNDLHHTLERDAIAESIKQSRGGFVMNPLATIDGELRENLGQYPKRLLKPVIQESDSVPIYNARGSD 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4210445 4214558 - Cp4.1LG07g05600.1 Cpe07g00613 472420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00613 651 PANTHER TORTIFOLIA1-LIKE PROTEIN 4 8 641 - -
Cpe07g00613 651 ProSiteProfiles HEAT repeat profile. 226 264 IPR021133 -
Cpe07g00613 651 MobiDBLite consensus disorder prediction 1 20 - -
Cpe07g00613 651 Gene3D - 17 383 IPR011989 -
Cpe07g00613 651 MobiDBLite consensus disorder prediction 433 468 - -
Cpe07g00613 651 SUPERFAMILY ARM repeat 24 291 IPR016024 -
Cpe07g00613 651 MobiDBLite consensus disorder prediction 443 464 - -
Cpe07g00613 651 MobiDBLite consensus disorder prediction 1 17 - -
Cpe07g00613 651 Pfam HEAT repeat 226 252 IPR000357 GO:0005515
Cpe07g00613 651 MobiDBLite consensus disorder prediction 329 369 - -
Cpe07g00613 651 MobiDBLite consensus disorder prediction 306 370 - -
Cpe07g00613 651 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 8 641 IPR033337 GO:0005874|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00613 - - - csv:101219826 1038.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01532 Cpe-Chr4:12036599 Cpe07g00613 Cpe-Chr7:4210445 0 dispersed
Cpe07g00613 Cpe-Chr7:4210445 Cpe11g00768 Cpe-Chr11:6166021 0 dispersed
Cpe07g00613 Cpe-Chr7:4210445 Cpe18g00820 Cpe-Chr18:7621974 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g803 Blo01g00409 Blo16g01141 Bda01g02242 . Bpe13g00475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00072 . . . . . . . . . Cpe07g00613 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005532 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00613 Cpe_Chr07 FPKM 27.34573 26.648783 69.516365 70.949409 140.768188 121.11364 126.935822 57.718098 52.098969 49.518475