Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00617 ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAACCCCCCCGAGCTCTGCGCACAACCCTGTTCGAACCGCAGACGATGTCGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTTTCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCACGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTCGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGATGGCATACGATTGCGAACACCATGACGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGGTATGGTGGTGAGTCAGGTGGGTTCGAATGGAGCAGATAG 828 49.64 MLRLQWLSSSLLPPLNPPELCAQPCSNRRRCRFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVSLGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTMTRPEDSSRVNNANPRYGGESGGFEWSR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4277112 4280834 + Cp4.1LG07g05590.1 Cpe07g00617 472424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00617 275 MobiDBLite consensus disorder prediction 251 275 - -
Cpe07g00617 275 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cpe07g00617 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC 68 275 - -
Cpe07g00617 275 Gene3D Transcriptional Coactivator Pc4; Chain A 80 253 IPR009044 GO:0003677|GO:0006355
Cpe07g00617 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 68 275 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cpe07g00617 275 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 267 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00983 Cpe-Chr2:8879837 Cpe07g00617 Cpe-Chr7:4277112 2.92E-47 transposed
Cpe11g00753 Cpe-Chr11:6021650 Cpe07g00617 Cpe-Chr7:4277112 3.74E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49767 PF08536 Whirly 2.00E-59 CL0609 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00617 - - mcha:111019296 433.335