Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00617 ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAACCCCCCCGAGCTCTGCGCACAACCCTGTTCGAACCGCAGACGATGTCGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTTTCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCACGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTCGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGATGGCATACGATTGCGAACACCATGACGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGGTATGGTGGTGAGTCAGGTGGGTTCGAATGGAGCAGATAG 828 49.64 MLRLQWLSSSLLPPLNPPELCAQPCSNRRRCRFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVSLGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTMTRPEDSSRVNNANPRYGGESGGFEWSR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4277112 4280834 + Cp4.1LG07g05590.1 Cpe07g00617 472424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00617 275 MobiDBLite consensus disorder prediction 251 275 - -
Cpe07g00617 275 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cpe07g00617 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC 68 275 - -
Cpe07g00617 275 Gene3D Transcriptional Coactivator Pc4; Chain A 80 253 IPR009044 GO:0003677|GO:0006355
Cpe07g00617 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 68 275 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cpe07g00617 275 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 267 IPR009044 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00617 - - - mcha:111019296 433.335
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00983 Cpe-Chr2:8879837 Cpe07g00617 Cpe-Chr7:4277112 2.92E-47 transposed
Cpe11g00753 Cpe-Chr11:6021650 Cpe07g00617 Cpe-Chr7:4277112 3.74E-121 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00617 . 69 275 Whirly Transcription Factor Family AT1G14410 70.4 2.9e-87 318.9
Cpe11g00753 . 69 236 Whirly Transcription Factor Family AT1G14410 56.7 1.1e-60 230.7
Cpe02g00983 . 31 203 Whirly Transcription Factor Family AT1G71260 60.7 1.7e-57 219.9
Cpe07g00617 . 80 244 Whirly Transcription Factor Family AT1G71260 51.2 1.6e-44 176.8
Cpe07g00617 . 47 275 Whirly Transcription Factor Family AT2G02740 67.0 1.9e-86 316.2
Cpe11g00753 . 64 236 Whirly Transcription Factor Family AT2G02740 58.6 4.4e-62 235.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49767 PF08536 Whirly 2.00E-59 CL0609 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00617 Cpe_Chr07 FPKM 6.908242 7.196163 3.703246 3.610813 17.079203 17.929991 16.545855 0.925059 0.704251 0.945768