Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00621 ATGAGGATTTATGCGATGTCCTCACCACTCTGTTCGTCAATTCGGGCATTGGCACCGCAGTGTTGGCGGCGGACGAACTTGAGATTCTTCATATTGCTTCAATCCAAGAGATGTGTAGGCTTCGCGCCTCGCTTTGTTGCTTGTTTGAGCAGTAATGACGACTCTGTTGCAATCCCCAAACCGGTGCCGCTCGCCTTCGATCCTGTGGAGGAGATGTACGGACTTGGCGTCGATTTAAAACCAAGGAATTCAAATTCCAGCGCTCCTGAACCCAGGTCCTGGTTTGGCCCAAATGGTCAGTATATTAGAGAGCTACCGTGTCCAAGTTGCCGAGGCAGGGGCTATGCGCCGTGTACGGAATGTGGAATTGAAAGATCCCGTGCAGACTGTTCCGTGTGTGATGGAAAGGGTATAGTGACCTGCCACCAATGCTTGGGAGATCGTGTCATATGGGAAGAGTCCATTGATGAACGACCATGGGAGAAAGCACGCTCCACTTCTCCATTAAGAATGAAGGAAGACGATGAAGTTGATAACTTGGAAATAAAGCTGGAAGAAAAGAAGAAATCGAAGCGTGTTTACCAATCACCTCCTCCTGAAGTTGGATTGAAGATCAGCCGATCATTAAAAAGTCTCAATGCCAAAACAGGTCTATTTAGTAAGAGAATGAAGATTATCCATCGTGACCCCACTCTTCATGCCCAGAGAGTGGCTGCAATTAAGAAAGCCAAAGGAAGTGCTGAAGCCAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTCAGTGATCCAAAAAATCGTCAAAAGCGGAGCATTGCAATGAAAGGAATAAAATTTTACTGTAAAAACTGTGGACGCGAGGGGCATCGAAGACACTATTGTCCAGAACTTAAGGGTGATTCAATCGATAGGCGATTCAGATGTCGAGTATGTGGGGAGAAGGGCCATAACAGAAGGACCTGTAAGAAGTCTAGGTTGAATGGTAAACCGATGAGCGCAACAATTCAGCATCGTTGCACGATATGTGGTGGTAAGGGTCACAGCAGTAGGAACTGTTCGAAGTCTGGCAATGTGTTGAGCCTGAATTTGATCAAGGGAGATAGGATGACTAATGAAAGCAGCAGAGTGAGGCAGTATCGTTGTAGGATCTGCGAAGAAAATGGTCACAATCGGCGGAATTGTCCCAATATCGACACGAAAGTTAACCATACAAGTCGTAGAAGAACATACAGCTGCAAACTATGTCATGAAAAAGGGCATAACAGTAGAACATGCCCAGTTATAAAGATGAACAATCTGAAGAAAAATCCTCCAGGCTCTGTAAACCAATGA 1332 45.57 MRIYAMSSPLCSSIRALAPQCWRRTNLRFFILLQSKRCVGFAPRFVACLSSNDDSVAIPKPVPLAFDPVEEMYGLGVDLKPRNSNSSAPEPRSWFGPNGQYIRELPCPSCRGRGYAPCTECGIERSRADCSVCDGKGIVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPTLHAQRVAAIKKAKGSAEARKRTSEALKAFFSDPKNRQKRSIAMKGIKFYCKNCGREGHRRHYCPELKGDSIDRRFRCRVCGEKGHNRRTCKKSRLNGKPMSATIQHRCTICGGKGHSSRNCSKSGNVLSLNLIKGDRMTNESSRVRQYRCRICEENGHNRRNCPNIDTKVNHTSRRRTYSCKLCHEKGHNSRTCPVIKMNNLKKNPPGSVNQ 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4294926 4307748 + Cp4.1LG07g05570.1 Cpe07g00621 472428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00621 443 SMART c2hcfinal6 380 396 IPR001878 GO:0003676|GO:0008270
Cpe07g00621 443 SMART c2hcfinal6 411 427 IPR001878 GO:0003676|GO:0008270
Cpe07g00621 443 SMART c2hcfinal6 280 296 IPR001878 GO:0003676|GO:0008270
Cpe07g00621 443 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Cpe07g00621 443 SMART c2hcfinal6 307 323 IPR001878 GO:0003676|GO:0008270
Cpe07g00621 443 Gene3D - 278 331 - -
Cpe07g00621 443 ProSiteProfiles Zinc finger CCHC-type profile. 281 296 IPR001878 GO:0003676|GO:0008270
Cpe07g00621 443 ProSiteProfiles Zinc finger CCHC-type profile. 380 396 IPR001878 GO:0003676|GO:0008270
Cpe07g00621 443 Coils Coil 170 190 - -
Cpe07g00621 443 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 13 365 - -
Cpe07g00621 443 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 371 429 - -
Cpe07g00621 443 SUPERFAMILY Retrovirus zinc finger-like domains 279 325 IPR036875 GO:0003676|GO:0008270
Cpe07g00621 443 ProSiteProfiles Zinc finger CCHC-type profile. 338 354 IPR001878 GO:0003676|GO:0008270
Cpe07g00621 443 ProSiteProfiles Zinc finger CCHC-type profile. 307 323 IPR001878 GO:0003676|GO:0008270
Cpe07g00621 443 SUPERFAMILY Retrovirus zinc finger-like domains 370 402 IPR036875 GO:0003676|GO:0008270
Cpe07g00621 443 Gene3D - 332 405 - -
Cpe07g00621 443 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 13 365 - -
Cpe07g00621 443 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 371 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00621 Cpe-Chr7:4294926 Cpe09g00089 Cpe-Chr9:523419 8.52E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00621 - - csv:101211176 732.25