Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00639 ATGTCAGCTGCTTCGAGGGGTAGAGTTACCATTACACTCGGCCGTAGCGGACAGGTAGTAAAAAAGGCTGGACCAGGAACTGATGTTTCTGTTTCTGATTCTTTGCTCGTTTCTGGAAGTAAGAGATCTGTGAGAGATAGATTGGGAAATAACCCTGATAGTGATCTGTTTTATGGAAGCCAACTTAATAACAAACGATCACGAGGGGATGGTATGTCAAATTGGAGTTCTAATGGGTTGGGCGTATCACACATTGGTAAAGATGACCTTCGGTATAAACTCTTGCAAAAAGATGCATCTAGACGTGCTCAAAGTGACAATAAGAGGTGTGTAGACCTTCGGGAGAAGCTACCTAAGGCAGATCAAACTCCTATTCGACATCTTGATTCACGGCGTCGAGATCCACCATTGCATAATACTAATATCGTACGCCGAACCCTTTCAACAAGAACAGTAGATGATTTACCTCAGGACTCGTTAGGAAGTTCTTATTCCACGTGGACCATGGAAAATTTGAGACAACGATCACCTGCTAGAATTGTAGAACCTTCAAGGCGCTACTCTCTACAAAGAGATGATGAGAAACTACAGAGAAGACCAACAAACCTTTCATTTGAGAACCCAAGATCAGTGAGCTCTGTAGCCAAAGATGTTCTCAATGCTTCAGGTTCTGTCAGTACTGCAACTTTTAGGACTAATTCTCTATTGCTTCCTACGTCTGCAAAGCCTGTGGCGCCTATTGTTCCACGACATCTTCCGCCAAGTGGCATTGCGCACAAAACTCTCTATCCAGGTGACGAACTTCAAAGCATAGATGGGTTCTTGCAGTCTCTAGGATTGGGAAAATTTTCCATTCTTTTTAAGGCCGAGGAAGTTGATATGACTGCCTTGAAGCAAATGGGGGAGAATGACCTCAAAGAGCTCGGAATACCTATGGGACCTAGAAAGAAAATTCTTCTTGCAATTGCTCCACATTCCAAGCGACAACCTTGA 993 43.61 MSAASRGRVTITLGRSGQVVKKAGPGTDVSVSDSLLVSGSKRSVRDRLGNNPDSDLFYGSQLNNKRSRGDGMSNWSSNGLGVSHIGKDDLRYKLLQKDASRRAQSDNKRCVDLREKLPKADQTPIRHLDSRRRDPPLHNTNIVRRTLSTRTVDDLPQDSLGSSYSTWTMENLRQRSPARIVEPSRRYSLQRDDEKLQRRPTNLSFENPRSVSSVAKDVLNASGSVSTATFRTNSLLLPTSAKPVAPIVPRHLPPSGIAHKTLYPGDELQSIDGFLQSLGLGKFSILFKAEEVDMTALKQMGENDLKELGIPMGPRKKILLAIAPHSKRQP 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4543529 4550847 + Cp4.1LG07g06480.1 Cpe07g00639 472446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00639 330 MobiDBLite consensus disorder prediction 41 80 - -
Cpe07g00639 330 MobiDBLite consensus disorder prediction 54 80 - -
Cpe07g00639 330 Pfam SAM domain (Sterile alpha motif) 269 322 IPR001660 GO:0005515
Cpe07g00639 330 PANTHER OSJNBA0060P14.15 PROTEIN 1 329 - -
Cpe07g00639 330 MobiDBLite consensus disorder prediction 99 139 - -
Cpe07g00639 330 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 1 329 - -
Cpe07g00639 330 MobiDBLite consensus disorder prediction 178 198 - -
Cpe07g00639 330 SUPERFAMILY SAM/Pointed domain 268 324 IPR013761 -
Cpe07g00639 330 Gene3D - 267 330 IPR013761 -
Cpe07g00639 330 SMART SAM_4 263 328 IPR001660 GO:0005515
Cpe07g00639 330 ProSiteProfiles SAM domain profile. 266 320 IPR001660 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00639 - - - csv:101207992 522.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00639 Cpe13g00922 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00639 Cpe-Chr7:4543529 Cpe13g00922 Cpe-Chr13:7817945 3.85E-30 dispersed
Cpe11g00731 Cpe-Chr11:5629727 Cpe07g00639 Cpe-Chr7:4543529 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0641 . . . . . . . Bda07g01570 . Bpe11g01738 . . . . Cmo04g02857 . . . . . Cpe13g00922 Cpe07g00639 . . . . . . . . . . . . . . . Csa05g01723 Chy09g00662 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004993 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 5 3 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00639 Cpe_Chr07 FPKM 7.371717 7.907223 0.0 0.0 0.0 0.0 0.0 0.144259 0.0 0.0