Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00640 ATGGATTTGAGAATTCTATCGTTCCTAATAATGCCGGTGCACGGATCCAAATCTGAGAAACAAGATGCGGCGGTGTTGCACCGTCGAGATGCGTATGATTTACTCGGTGTCTCCAGGAACTCCACGGACCAGGAAATCAAGAGCGCTTACAGAAAATTGGCTCTCAAGTATCATCCTGACAAGAATGCAAACGATCCCAAAGCTGCTGACATGTTTAAGGAAGTCACTCTTTCCTACACCATTTTGTCAGATCCAGAAAAAAGACGACAATATGATGCTGCTGGATTTGAGGCTGTTGAAACAGAAAGCCAAGAATTGGAGCTGGATCTTTCAAGTTTGGGGACAGTGAACACCATGTTTGCTGCCCTTTNGGGGGGCTGGGGGGGGGCTTTCTATTTTAATCCGACCTTTGATTGCAGCAAGCTTGGCGTGCCAATTAAAACAGCTGTATCTGCAACAGTTTTGGAAGAGGCACTTAATGGGGTTGTGACTGTTCATCCACTTCCATTGGGCATACCTATTTCTAAGAAGGAAACACAGGGTGGATTTGTTTGCCGAGTTCACTCACCTGATAAAAGCAAATTTAAGTTGTTGTATTTTGATCGGGAAGAAACTGGTGGATTAAACCTTGCTTTACAGGAGGAGAGTACAAAGGTTGGAAAAGTCACATCTGCTGGGATGTATTTTCTCGGGTTCCCTGTCTATCGGTTGGAACAAACATTGAACTTGATGATCTCTGCTAAGGATCCAGATGCTGCCTTTTTTAAAAAATTAGATGGTTTCCAGCCATGTGAAATAATAGGATTAAAGGCGGGGACTCATGTCTTTGCAGTCTATGGTGACAATTTTTTTAAAAGTGCGAGCTATACTATTGAGGCATTTTCTGCGGCGTCTTTTTCTGAAGAGAAGGAGAATCTTAGAGCCGTGGAAGCTCAAATTTTGACAAAAAGGGTGGAAATGTCCAAATTTGAAACGGAATATCGTGAGGTTCTAGCACAATTTACAGAGATGACTAGCAGATACACTCAAGAAATGCAAGTGATCGACGACCTTCTCAAACAGAGGAATGAAATTCATGCCTCCTACACAACTGGTCCTCCAGTAAAACGGAGTAGGAGCCGGATTAAGGGTTCGTTTAAGGATTCAAAAGAAGACAGCCAAATAAGGGAGAGGAAATCTACAAGGGATAGACCCAAGAAGAAAAAATGGTTCAATATCCATTTAAAGGTTGATAAAAGAAAATCTTGTTAA 1251 42.21 MDLRILSFLIMPVHGSKSEKQDAAVLHRRDAYDLLGVSRNSTDQEIKSAYRKLALKYHPDKNANDPKAADMFKEVTLSYTILSDPEKRRQYDAAGFEAVETESQELELDLSSLGTVNTMFAALXGGWGGAFYFNPTFDCSKLGVPIKTAVSATVLEEALNGVVTVHPLPLGIPISKKETQGGFVCRVHSPDKSKFKLLYFDREETGGLNLALQEESTKVGKVTSAGMYFLGFPVYRLEQTLNLMISAKDPDAAFFKKLDGFQPCEIIGLKAGTHVFAVYGDNFFKSASYTIEAFSAASFSEEKENLRAVEAQILTKRVEMSKFETEYREVLAQFTEMTSRYTQEMQVIDDLLKQRNEIHASYTTGPPVKRSRSRIKGSFKDSKEDSQIRERKSTRDRPKKKKWFNIHLKVDKRKSC 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4559190 4565225 + Cp4.1LG07g06530.1 Cpe07g00640 472447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00640 416 CDD DnaJ 30 84 IPR001623 -
Cpe07g00640 416 ProSiteProfiles dnaJ domain profile. 30 95 IPR001623 -
Cpe07g00640 416 Gene3D DnaJ domain 14 114 IPR036869 -
Cpe07g00640 416 SMART dnaj_3 29 87 IPR001623 -
Cpe07g00640 416 MobiDBLite consensus disorder prediction 360 400 - -
Cpe07g00640 416 PRINTS DnaJ domain signature 67 87 IPR001623 -
Cpe07g00640 416 PRINTS DnaJ domain signature 87 106 IPR001623 -
Cpe07g00640 416 PRINTS DnaJ domain signature 32 50 IPR001623 -
Cpe07g00640 416 PRINTS DnaJ domain signature 50 65 IPR001623 -
Cpe07g00640 416 SUPERFAMILY Chaperone J-domain 27 119 IPR036869 -
Cpe07g00640 416 MobiDBLite consensus disorder prediction 374 393 - -
Cpe07g00640 416 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 11 415 - -
Cpe07g00640 416 Pfam DnaJ domain 30 92 IPR001623 -
Cpe07g00640 416 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 11 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00640 - - - csv:101204372 685.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01335 Cpe-Chr1:8036232 Cpe07g00640 Cpe-Chr7:4559190 4.36E-129 dispersed
Cpe01g01805 Cpe-Chr1:15021396 Cpe07g00640 Cpe-Chr7:4559190 2.39E-151 dispersed
Cpe07g00640 Cpe-Chr7:4559190 Cpe09g00315 Cpe-Chr9:1871329 4.11E-138 dispersed
Cpe07g00640 Cpe-Chr7:4559190 Cpe13g00398 Cpe-Chr13:4320461 2.40E-151 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g787 Blo01g00407 Blo16g01146 Bda01g02237 . Bpe13g00480 . . . . Cmo18g01213 . Cma18g01231 . Car18g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00067 . . . . . . . . . Cpe07g00640 . . . . . . . . . . . . . . . Csa05g01687 Chy09g00629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007840 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00640 Cpe_Chr07 FPKM 7.519417 9.552703 8.173163 8.586634 17.416697 18.530907 17.823915 12.418141 12.034004 10.953973