Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00642 ATGGTGTATGTTATAACTTGTGAGGCTTACTTTACTGAACTTGGTTTCGACTCTGTAACTATGTCGACATCTTACCTACCTGCCACTACTGATTCAATTGCTGAGGCTTTAGAAGCTAAGAATCCGTCAGAATCAATCTCAATCCTTTACCGTATTCTTGAAAACCCTTCATCTTCCCCTGAGGCGCTACGTATAAAAGAACAGGCTATAACAAACTTATCAGATCTTCTCAGACAAGAGAATCGTGCAGAGGATCTTCGGAATCTTTTGACTCAACTAAGGCCTTTCTTCAACTTGATTCCGAAAGCAAAAACAGCAAAAATTGTGAGAGGAATCATTGATGCAGTGGCTAAAATACCAGATACATCTGATCTTCAGATTTCCCTATGCAAGGAAATGGTGCAGTGGACACGCGCTGAGAAGCGAACTTTCCTTAGGCAACGGGTTGAAGCCAGGCTTGCAGCTCTTTTGATGGAAAATAAGGAGTACTCTGAAGCCTTAAATCTCCTGGCTGGATTAATCAAGGAAGTTAGAAGACTGGACGATAAGCTTCTCCTTGTAGACATAGATTTATTGGAGAGCAAGCTTCACTTTTCCCTGAGGAACCTCCCTAAAGCGAAGGCTGCACTTACTGCTGCAAGAACAGCTGCTAATGCCATATACGTGCCTCCAGCACAACAGGGCACTATTGACTTGCAGAGTGGCATCCTCCATGCGGAAGAGAAGGATTACAAAACTGCTTACAGTTATTTCTTTGAAGCTTTTGAAGCCTTCAATGCTCTTGAAGATCCCCGTGCTGTATTTAGCCTCAAATATATGTTGCTGTGCAAAATAATGGTTAGCCAGGCGGATGACGTGGCAGGAATAATATCATCGAAAGCAGGTCTACAATACGTGGGGGTTGAGCTGGATGCCATGAAAGCTGTAGCTGATGCACATTCCAAACGATCGTTAAAGCTTTTCGAGACAGCACTAAGAGATTTTAAGGCTCAACTAGAGGAAGATCCTATTGTCCACCGACATCTCTCTTCTCTCTACGACACTCTGTTGGAGCAAAATCTGTGCAGGTTGATTGAACCATTCTCAAGAGTTGAGATTGCTCACATTGCGGAGCTGATTGAACTGCCAGTGGATCATGTTGAAAAGAAGTTGTCTCAGATGATTCTTGACAAGAAATTTGCAGGCACTTTAGACCAAGGTGCTGGATGCCTAATCATTTTCGACGACCCAAAGACCGACGCTATATATCCAGCTACACTGGAAACCATTTCCAACATTGGCAAGGTTGTGGACAGCCTCTATGTTAGGTCAGCAAAGATAATGGCATAA 1329 43.34 MVYVITCEAYFTELGFDSVTMSTSYLPATTDSIAEALEAKNPSESISILYRILENPSSSPEALRIKEQAITNLSDLLRQENRAEDLRNLLTQLRPFFNLIPKAKTAKIVRGIIDAVAKIPDTSDLQISLCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYSEALNLLAGLIKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGVELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPVDHVEKKLSQMILDKKFAGTLDQGAGCLIIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4585726 4588662 + Cp4.1LG07g06500.1 Cpe07g00642 472449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00642 442 SUPERFAMILY TPR-like 150 342 IPR011990 GO:0005515
Cpe07g00642 442 Coils Coil 146 166 - -
Cpe07g00642 442 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 413 438 IPR040780 -
Cpe07g00642 442 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 340 423 - -
Cpe07g00642 442 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 34 148 IPR040773 -
Cpe07g00642 442 Pfam PCI domain 305 406 IPR000717 -
Cpe07g00642 442 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 21 442 - -
Cpe07g00642 442 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-LIKE PROTEIN 21 442 - -
Cpe07g00642 442 SMART PINT_4 340 423 IPR000717 -
Cpe07g00642 442 Coils Coil 66 86 - -
Cpe07g00642 442 SUPERFAMILY Winged helix DNA-binding domain 334 416 IPR036390 -
Cpe07g00642 442 ProSiteProfiles PCI domain profile. 243 411 IPR000717 -
Cpe07g00642 442 Gene3D - 66 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00642 K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6 - pop:7457878 741.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00541 Cpe-Chr5:3225755 Cpe07g00642 Cpe-Chr7:4585726 4.98E-06 dispersed
Cpe07g00642 Cpe-Chr7:4585726 Cpe13g00295 Cpe-Chr13:2469226 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g963 Blo01g00440 Blo16g01102 Bda01g02140 Bda11g01200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01200 . Bpe02g02328 Bma01g00111 Bma06g00711 . . . . . . . . Cpe07g00642 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004931 2 1 2 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 2 1 2 1 2 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00642 Cpe_Chr07 FPKM 0.887302 1.426483 19.229033 20.771484 2.366455 2.098422 1.314987 2.059346 2.197045 2.040569