Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00645 ATGGAACCCAACAGGGTTTTGCTGGATTTTCAAAATCCGATCCAAGATGCCATCTCCACAATCCAATTCGCTCCCCGTTCGAACAATCTCCTTATTTCTTCCTGGGATTCTAGTCTTCGTTTGTACGATGTGGATAATTCTGCACTCAGACTTGAAGCTCCCTCCGAAGCTGCACTGCTTGACTGCTGCTTCCAGGACGAGTCACTGGCTTTGAGCGCTGGTTCTGATGGCTTAATAAGAAGGTATGACTTGCAATCAGGAATTTCTGAAACCATTGGAAAACATGATGATATTGCAACCAATATCAGATATTCGGATCAAACATGCCAAATAGTAACAGCGGGTTTGGATGGAAAGATACTGTTGTGGGACACGCGTAGAGAAAAATGTGTGTCATTTGTGAGAAACAGGGGTTCAGATGTGGTGTCCATGTCTATCTCTGGATTTAATTTAATTGTGGCTTCTGGAATATGTGTATATTCACTGGACTTACGTAACATACAAAAACCAGTTCAACTCACAGATTCTTGTATGAAAGTTCCAGTAGCTTGTGTAAGCTCTGTTCCTTATACTGAAGGATTTGCGATTGGCTCAGTAGATGGACGTGTAGCTTTGGAGATTGCTTGTCTGGACCAAGCAGATGACATCAGATATATTTTCTGGTGTCACCCAAAGTCAAAGGGTAGAAGAAAGCATTTGGAGTCGGTGAATGATATTGTGTTTAATCCAATATTTCCAAATAGCGTGGCATCGTTGTCGTACAACTGCGGAGGTCAACTTTTGGCTGTTGCTTCAAGTTGTACGTATCAAGAAGCTAAAGAAAGAGAAGATGCTCCTCAAGTGTTCATACATGTAATGGAGGAGTTCAATCCCAAATCTTTCTCTGCCTCTTCCACTGGATAG 903 42.19 MEPNRVLLDFQNPIQDAISTIQFAPRSNNLLISSWDSSLRLYDVDNSALRLEAPSEAALLDCCFQDESLALSAGSDGLIRRYDLQSGISETIGKHDDIATNIRYSDQTCQIVTAGLDGKILLWDTRREKCVSFVRNRGSDVVSMSISGFNLIVASGICVYSLDLRNIQKPVQLTDSCMKVPVACVSSVPYTEGFAIGSVDGRVALEIACLDQADDIRYIFWCHPKSKGRRKHLESVNDIVFNPIFPNSVASLSYNCGGQLLAVASSCTYQEAKEREDAPQVFIHVMEEFNPKSFSASSTG 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4620074 4625269 - Cp4.1LG07g06420.1 Cpe07g00645 472452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00645 300 Gene3D - 4 293 IPR015943 GO:0005515
Cpe07g00645 300 PANTHER MRNA EXPORT FACTOR AND BUB3 243 291 - -
Cpe07g00645 300 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 243 291 - -
Cpe07g00645 300 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 5 244 - -
Cpe07g00645 300 ProSitePatterns Trp-Asp (WD) repeats signature. 111 125 IPR019775 -
Cpe07g00645 300 SMART WD40_4 3 43 IPR001680 GO:0005515
Cpe07g00645 300 SMART WD40_4 85 124 IPR001680 GO:0005515
Cpe07g00645 300 SMART WD40_4 44 83 IPR001680 GO:0005515
Cpe07g00645 300 SUPERFAMILY WD40 repeat-like 12 264 IPR036322 GO:0005515
Cpe07g00645 300 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 133 IPR001680 GO:0005515
Cpe07g00645 300 PANTHER MRNA EXPORT FACTOR AND BUB3 5 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00645 K02180 BUB3; cell cycle arrest protein BUB3 - csv:101216492 452.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00645 Cpe-Chr7:4620074 Cpe14g00270 Cpe-Chr14:1561980 3.71E-37 dispersed
Cpe07g00645 Cpe-Chr7:4620074 Cpe01g00405 Cpe-Chr1:2346667 6.12E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g946 . . . . Bpe13g01393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe07g00645 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003570 0 3 1 1 1 2 1 2 1 1 1 2 1 2 2 1 2 2 1 2 1 1 3 1 1 0 3 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00645 Cpe_Chr07 FPKM 4.890417 4.989205 10.99663 12.558479 11.121874 10.306763 12.553368 16.170296 16.481926 16.837807