Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00646 ATGGCGGGGAAGCCTAGCTCGGTTTCCTTCAGGGTTCCGTACCGGAACCTCCAGGATGCGGAAGTAGAGATGGTGGCTGTCGATGAACAGCAGCTCCAAGGGATTGATCTCAATTCTCCTTCTTCTAGTAGATGTGCCAATGGAAACCCAGACGGTTCGTCGTCAACGCCTCATGTTAGATCTACGCCAAATAGTTTGATTATCTTAATTCTCAGTTGTACTATCGCTGCTGGTGTTCAATTTGGTTGGGCATTACAGCTCTCCTTACTAACTCCCTATATTCAGACACTTGGAATCGAGCATGCATTTTCTTCATTTATTTGGCTTTGCGGTCCCATCACTGGTCTCGTGGTTCAACCATGTGTTGGTATATGGAGTGATAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCTTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGGTATATACTAGGAGATACGAAGGAACATTGCAGAGTATACAAGGGTACACGAACAAGGGCAGCTATTATATTTGTAATAGGCTTTTGGATGCTTGATCTTGCAAACAATACAGTGCAGGGTCCTGCCCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCAGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTAGGATTTTCAGCAGGAGCTAGTGGAAACTGGCACAAATGGTTTCCGTTCCTTTTGAGTGATGCTTGCTGTGAAGCCTGTGGAAACCTTAAAGCAGCATTTCTTATCGCTGTGGTTTTTCTAACCATATGTACTCTTGTTACCATATATTTTGCCCATGAAGTTCCACTTACTGCTGTAGATCAACTACCACGTTTATCAGATTCTGCTCCTCTGTTGAATGGGAATGAACAAAGTAGTCCTAATATTGTAAAATCGGAACTTAACAGTCCAAATGGGAGCAATGACAACTATGGCTATCAAAAAGATGTGAATTTGGAATTTTCGAAATCAATAATTGAGGAAAATCACAGTGAAAGTTATTACGATGGTCCTGCAACAGTGGTAGTCAAATTGTTAACCAGTTTAAGGCATTTACCACCGGCCATGCATTCAGTGCTTCTTGTGATGGCTCTTAGCTGGTTATCCTGGTTTCCCTTCTTCTTATTTGATACGGATTGGATGGGAAGGGAAGTGTACCATGGGGACCCAAAAGGAAGTTTGGCTGATGAACAGGTTTATGATCAGGGTGTCAGAGCAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTCTTCATAGAGCCGATGTGTCAGCGCATGGGAGCAAGACTTGTCTGGGCAATAAGCAACTTTATTGTGTTTGCATGCATGACGGGAACTACTATTATCAGTTTGATATCTACTACCTGGATTCTGACACTTGAGAGACTGATTTTTACAGGATTGGCTATTGGAGTTCTCAATCTTGCAGTTGTTATTCCCCAGATGATTGTATCACTGGGTGCTGGGCCATGGGATGCATTATTCAGTGGAGGAAACATTCCTGCATTTGCTTTGGCTTCTGTTTGTGCGCTTGCGGCTGGAGTTGTTGCGCTTCTTAGATTGCCTGATCACACCAACAGTTCTTTCAAATCCACAGGCTTTCATTTTGGTTGA 1689 42.87 MAGKPSSVSFRVPYRNLQDAEVEMVAVDEQQLQGIDLNSPSSSRCANGNPDGSSSTPHVRSTPNSLIILILSCTIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSDACCEACGNLKAAFLIAVVFLTICTLVTIYFAHEVPLTAVDQLPRLSDSAPLLNGNEQSSPNIVKSELNSPNGSNDNYGYQKDVNLEFSKSIIEENHSESYYDGPATVVVKLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSLADEQVYDQGVRAGAFGLLLNSVVLGISSFFIEPMCQRMGARLVWAISNFIVFACMTGTTIISLISTTWILTLERLIFTGLAIGVLNLAVVIPQMIVSLGAGPWDALFSGGNIPAFALASVCALAAGVVALLRLPDHTNSSFKSTGFHFG 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4628819 4634867 + Cp4.1LG07g06510.1 Cpe07g00646 472453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00646 562 Pfam Major Facilitator Superfamily 78 499 IPR011701 GO:0022857|GO:0055085
Cpe07g00646 562 PANTHER SUGAR TRANSPORTER 40 484 - -
Cpe07g00646 562 PANTHER SUGAR TRANSPORTER 492 562 - -
Cpe07g00646 562 PANTHER SUCROSE TRANSPORT PROTEIN SUC3 492 562 - -
Cpe07g00646 562 MobiDBLite consensus disorder prediction 306 329 - -
Cpe07g00646 562 MobiDBLite consensus disorder prediction 36 59 - -
Cpe07g00646 562 CDD MFS_SLC45_SUC 69 544 - -
Cpe07g00646 562 Gene3D MFS general substrate transporter like domains 62 545 IPR036259 -
Cpe07g00646 562 PANTHER SUCROSE TRANSPORT PROTEIN SUC3 40 484 - -
Cpe07g00646 562 SUPERFAMILY MFS general substrate transporter 54 549 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00646 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101205348 933.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00193 Cpe-Chr7:1211848 Cpe07g00646 Cpe-Chr7:4628819 1.58E-134 dispersed
Cpe07g00646 Cpe-Chr7:4628819 Cpe11g00702 Cpe-Chr11:5080334 4.63E-12 dispersed
Cpe07g00646 Cpe-Chr7:4628819 Cpe02g01353 Cpe-Chr2:11947402 4.66E-120 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe02g01353 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.1 1.7e-179 626.3
Cpe07g00193 . 32 496 Sucrose Transporter Gene Family AT1G22710 50.9 2.9e-139 492.7
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.6 1.2e-177 620.2
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.4 6.4e-136 481.5
Cpe02g01353 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.5 1.8e-148 523.1
Cpe07g00646 . 152 562 Sucrose Transporter Gene Family AT2G02860 63.0 4.0e-156 548.5
Cpe02g01353 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 1.4e-162 570.1
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.2 2.0e-174 609.4
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Cpe07g00193 . 12 503 Sucrose Transporter Gene Family AT1G09960 71.8 9.4e-207 716.8
Cpe02g01353 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.5 2.7e-129 459.5
Cpe02g01353 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 2.3e-173 605.9
Cpe07g00193 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 2.5e-135 479.6
Cpe02g01353 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 1.9e-167 586.3
Cpe02g01353 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 2.3e-173 605.9
Cpe07g00193 . 31 507 Sucrose Transporter Gene Family AT1G71880 51.2 2.5e-135 479.6
Cpe02g01353 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.1 1.7e-179 626.3
Cpe07g00193 . 32 496 Sucrose Transporter Gene Family AT1G22710 50.9 2.9e-139 492.7
Cpe07g00646 . 152 562 Sucrose Transporter Gene Family AT2G02860 63.0 4.0e-156 548.5
Cpe07g00193 . 12 503 Sucrose Transporter Gene Family AT1G09960 71.8 9.4e-207 716.8
Cpe02g01353 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.5 2.7e-129 459.5
Cpe02g01353 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 1.9e-167 586.3
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.2 2.0e-174 609.4
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Cpe02g01353 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.5 1.8e-148 523.1
Cpe02g01353 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.6 1.2e-177 620.2
Cpe07g00193 . 31 496 Sucrose Transporter Gene Family AT2G14670 51.4 6.4e-136 481.5
Cpe02g01353 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 1.4e-162 570.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00646 Cpe_Chr07 FPKM 25.11405 29.511932 27.235815 26.752914 31.252945 29.892982 27.745293 41.35421 38.325253 40.126198