Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00648 ATGTATGAATTGGTACTAGGGTTTCTTATTCAACCTTCGGACCTTATCGACGGGCTTCAATTTGTGGGGTTCGATTTTCGAATCTCTCGGAATATGTACTCGTCTAGAGGCAGTGGTAACTACGGACAGCAGTCCTCGTCATATGCTGCGCAGACTGGATATGGCCAAAATTTGGGAAGTGTCTACCCGGGGAATTCTGTTGGGGGACCCGACTCTCAACAACACTCCATGGCATCTAGGCACTCCTCAATGTTGGGAGCATCACAGGAAGCTGATACTGCTGCATACAGGCCACATTCATCGAGCACCACTCATTATGGAGGACAGTATGGTTCTGTGTATAGCTCAGGTGCATTGAGTGGCAAACCACAGGGCCCTCCACTGAGTGCCAAAGGGAATGGTGTTCCATCTGCTCTGGAAGGTCGGGGAAGCTATGCCTCAGCCATTCCTGATTCCCCCAAGTATCTGTCAAGTGACTATATATCATCTTCAAACCATGGCTATGGTCATAGAACTGGTCAGTTGTTCACTGAAAAGGTCACTGAATATCCTACTCTGGAAAGGCGGCAATATAGTGAGCATCAGAGTGCTTATTTAGGGAGGGATTTGAAAAATGATGCAGCTGGACGATTTTCTGAATCTGTTGGTTTTGGGCATCAACGTCATGCCGACTCGTATGACCGTGTTGATCAGATGTCCCTGCTTCGTCAAGAGCAGTTACTAAAATCTCAATCTCTGCAATCAGACGCCCTTGATGGGAGCTCAAGACAAAATGATTATCTTTCAGCAAAAGCTGCTGCTAGTCTTCATTCCACTCAAGAGTTTCTCTCTTACGGAGTAAGAGTAGATGCTGATCCTCGCAACGTATCGGTGCTCAATTCTTCTTATAGTGGTCAACATTCGACGTCAATTTTAGGGGCTGCTCCACGGAGAAATGTGGATGAACTTATCTACTCCCAAAGTTCATCAAATCCAGGTTATGGAGTGAGCTTGCCACCAGGTAGAGACTATGCTGCAGGGAAAGGGCTTCATGGAACTTCTCTCGATTCAGATTATTCAGGTAGTATGTTGACTCATAGTAGCCATCCAAGGATTGATGAACACAAAGATGATAGAGCTGGTTATCTTCGGGAATTTGAGCTTAGAGAGGAGGAGCGTCGGAGGGACCGTTTTCGCATGAGAGAGAAAGAAAAAGAAAGGGAGAAGGCACGAGAAAAAGAACGGGAGCGTGAACGAGAACGAGAAAGAGAACGGGAACGAGAACGGCGAGAACGTGAACGAGAAAGAGAGAGAGAACGAGAAAGAGAGCGGGAAAGAGAACGGGAAAGAGAGCGCATCTTGGAGAGACAGAAAGAAAGAGACAGAGAATTCAAACGTGGGCTCGAAGCTAGGCGTATAAGCACTCCACCAAGACTTTCTAAAGACAGGCGTGGTTCCTCTTTGGCAAAGGAGGGAAGATCGTTACACCGAGATTCTCCACATTATGAAGCCTTGCATAGGCATCACTCACCCGTTAAAGAAAAAAGGAGAGAATATGTCTGCAAGGTGTGCCCGCACAGTTTAGTTGACATACAACGGGATTATTTGTCATTGGAAAAGCGATATCCTCGACTCTTTGTATCCCCAGAGTTTACAAAGGTTATTGTGAATTGGCCAAAGGAGAAACTTGACCTTTCCATCCATACTCCTGTCAGTTTTGAGCATGACTTTATTGATGAAGGGATCGTATCTGGCTCAAAAGAGCTTTCCAATGAGCTTAAGGCTGGAGAACTTGAGAAATCAGATCATGTGAATATAGTATGGAATGTGAAGATTATTTTGATGAGTGGTATCAGTAAAAATGCTCTTGAGGAGTTGTCATCTGAGAGAAGTTCAGACGACCGTGTAGCCCACTTTTGCAATATCCTTAGGTTTGCAATTCTTAAGAAAGGCCGGAGTTTCATGGCAATTGGTGGTCCATGGCAATCATCTGATGGTGGTGATCCTTCAGTTGATGATGGTGCTTTAGTTCAAACAGCCCTTAGGTATGCGAAGGATGTTACACAACTAGACTTGCAAAACTGCCACCACTGGAATCGTTTCTTAGAGATACACTATGATAGATATGGAAAGGATGGGGTATTGAGCCATAAAGAAGTCTCTGTATTATTTGTTCCAGATTTATCTGATTGTCTCCCTTCATTAAATGTGTGGAAGGAACAATGGCTTGCGCATAAAAAGGCTGTTGTTGAGAGAGAGCGCCAGATTGCACTGAAAAAGGAGATATCCAAGGAGACAAAGGAAGGCATGGAAGTCAAAGAAACAGAATCAACAAAAGATACTAAAAGTGTCAGCAAGTCTGAAAAAAAGATAATGAGTGACAAAGATGACAAAGGGAATACGTCTGAGGGAAGGGGTAATGGAAGTAGCACAAAACTTGAAAGCAAGGATGAGGATGAAAGAGGCAAGGAAGCTCAGAATGTTGAGAAACCAGATCAAGAAGAAGTTGATGGTGGTACTCAGAAAAGTGGCACTGTGAAATCTGGAAAAAAGAAGATTGTCAAGAAGATAGTTAAACAAAAGGCCAAAGCGGTTGGTGATGCAGCCAACAAGAAAAATGACAAACTGGATGAAAAGGTTGATGGAGAGAAGAATTCTGACATTCCTCCGGATCCACCTTCAAATGATTCTGCTGGTGTTAAGACATTTGCAAGGAAAAAAGTAATTAGACGTGTGGCAAAAAGTGATCAGAATGAAAAAAATAAAGATGTACTTCCAAAAGAAGAGAATGAAATGGATTGCTCTGTGGATAAGTCTAAGGACAATTCAGATGTCAATGCAACAGCTACCCAAGATACTGTTGTGAAAACAACTGTGAAAAAGAAAGTAATTAAGAGGGTACCTAAAAAAAAGGTTCCTGCAGTGGTTTCTAGCGAGGAAGCTTCTAGAAAAGGTGATGGGCATGAGAAGAAGGTTACAGCAGATGAAACACTCAATGTGGAGAATCCCACTACAGATGATAAACAAGAAAAAAATATTCCTAAATCAAAGTCGACATCTTCTCCTACTACATTGAAACTGCATGATTCTGTAAATTTGAAGAAGACTGAGAAAGAGGAAATGATGAATGAAAATGAAGCTGGCAAGGAATTCAGTCCTACAACCAATTCGATTGACAAACAAAAAGTTGGTGAGAAGGATAGTAGTAATGGAAAGAGAGAAAAATCTAGAGATGGTGAACAATCAAAAGAGGAGAAGGAGAAAATGAGTAAAGATGTGTCTAAAAGCAAACCAAACAAAGAAGTAAAAGAAAAGAGAAAGTCCGAAGAACCTCCTCGACATCCTGGGTTGATTCTACGAGCTAAAGGGAGCAAGGATTCCAAATTTCGGTCATTGTCGCTTTCCCTTGACTCACTCTTGGAGTATACAGACAAAGACATTGAAGAATCGACATTTGAGCTTTCACTATTTGCTGAATCACTGAATGAAATGCTTCAGTATCAGATGGGAAGCCGAATTTTAACTTTCCTCCAGAAATTGCGTGTCAAGTTTGTGGCAAAGAGAAATCAACGAAAGCGGCCGCGGGAGGAATTACACAAGGAAGACAAAAAAAAATCATCACCCAAACGGTCAAAGACTATTGACGTTCCTAAATCTATCGATCAGGAAACATCAGGTGCATCTCAAGTGGATGCCGTAACACCTGCAGTGGAGGGGAACAACTCAGCTGGTCATGTTGATGAGATGAAGATGGAAACTGAAACAGATTACGAGCCTGAAGAAGAGCCTGAAGAAGATCCTGAAGAAGATCCTGAAGAAGACCCTGAAGAAGATCCTGAAGAATGCGAGGAACTGGAGGACGCGAAGAATGCTACAACGGGAGCCAATGAAGAGATTGAGTTGAACGAAGAGGGGAAGACAGCATCAAATAAAGAGCCTGAAAATGCTTTTCGGTTCTTCGATCGAAACTTAGTTGGCTATATTCGGGTTGAAGATATGAGAATGATGATCCACAGCATGGGGAAGTTCCTTTCTCACAGGGATGTAAAGGAACTTGTTCACAGTGCATTGTTGGAGTCGAACACTGGAAGGGATGATCGGATCCTGTATGGCAAACTTGTACGAATGTCTGACCTTTGA 4119 42.9 MYELVLGFLIQPSDLIDGLQFVGFDFRISRNMYSSRGSGNYGQQSSSYAAQTGYGQNLGSVYPGNSVGGPDSQQHSMASRHSSMLGASQEADTAAYRPHSSSTTHYGGQYGSVYSSGALSGKPQGPPLSAKGNGVPSALEGRGSYASAIPDSPKYLSSDYISSSNHGYGHRTGQLFTEKVTEYPTLERRQYSEHQSAYLGRDLKNDAAGRFSESVGFGHQRHADSYDRVDQMSLLRQEQLLKSQSLQSDALDGSSRQNDYLSAKAAASLHSTQEFLSYGVRVDADPRNVSVLNSSYSGQHSTSILGAAPRRNVDELIYSQSSSNPGYGVSLPPGRDYAAGKGLHGTSLDSDYSGSMLTHSSHPRIDEHKDDRAGYLREFELREEERRRDRFRMREKEKEREKAREKERERERERERERERERRERERERERERERERERERERERILERQKERDREFKRGLEARRISTPPRLSKDRRGSSLAKEGRSLHRDSPHYEALHRHHSPVKEKRREYVCKVCPHSLVDIQRDYLSLEKRYPRLFVSPEFTKVIVNWPKEKLDLSIHTPVSFEHDFIDEGIVSGSKELSNELKAGELEKSDHVNIVWNVKIILMSGISKNALEELSSERSSDDRVAHFCNILRFAILKKGRSFMAIGGPWQSSDGGDPSVDDGALVQTALRYAKDVTQLDLQNCHHWNRFLEIHYDRYGKDGVLSHKEVSVLFVPDLSDCLPSLNVWKEQWLAHKKAVVERERQIALKKEISKETKEGMEVKETESTKDTKSVSKSEKKIMSDKDDKGNTSEGRGNGSSTKLESKDEDERGKEAQNVEKPDQEEVDGGTQKSGTVKSGKKKIVKKIVKQKAKAVGDAANKKNDKLDEKVDGEKNSDIPPDPPSNDSAGVKTFARKKVIRRVAKSDQNEKNKDVLPKEENEMDCSVDKSKDNSDVNATATQDTVVKTTVKKKVIKRVPKKKVPAVVSSEEASRKGDGHEKKVTADETLNVENPTTDDKQEKNIPKSKSTSSPTTLKLHDSVNLKKTEKEEMMNENEAGKEFSPTTNSIDKQKVGEKDSSNGKREKSRDGEQSKEEKEKMSKDVSKSKPNKEVKEKRKSEEPPRHPGLILRAKGSKDSKFRSLSLSLDSLLEYTDKDIEESTFELSLFAESLNEMLQYQMGSRILTFLQKLRVKFVAKRNQRKRPREELHKEDKKKSSPKRSKTIDVPKSIDQETSGASQVDAVTPAVEGNNSAGHVDEMKMETETDYEPEEEPEEDPEEDPEEDPEEDPEECEELEDAKNATTGANEEIELNEEGKTASNKEPENAFRFFDRNLVGYIRVEDMRMMIHSMGKFLSHRDVKELVHSALLESNTGRDDRILYGKLVRMSDL 1372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4645329 4658611 + Cp4.1LG07g06540.1 Cpe07g00648 472455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00648 1372 Pfam DBC1 631 748 IPR025954 -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 460 504 - -
Cpe07g00648 1372 SUPERFAMILY EF-hand 1303 1349 IPR011992 -
Cpe07g00648 1372 Coils Coil 1370 1372 - -
Cpe07g00648 1372 ProSiteProfiles EF-hand calcium-binding domain profile. 1301 1336 IPR002048 GO:0005509
Cpe07g00648 1372 Coils Coil 381 450 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 759 1122 - -
Cpe07g00648 1372 Gene3D - 1303 1370 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 1183 1210 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 965 1007 - -
Cpe07g00648 1372 SMART DBC1_2 629 754 IPR025954 -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 60 119 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 759 795 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 853 879 - -
Cpe07g00648 1372 Coils Coil 1275 1295 - -
Cpe07g00648 1372 PANTHER CCAR1 HOMOLOG 423 1371 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 1279 1303 - -
Cpe07g00648 1372 PANTHER CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN 32 433 IPR025224 GO:0006355
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 1180 1303 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 1053 1120 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 934 950 - -
Cpe07g00648 1372 Pfam BURAN domain 524 610 IPR045354 -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 350 370 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 1008 1022 - -
Cpe07g00648 1372 PANTHER CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN 423 1371 IPR025224 GO:0006355
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 390 444 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 1246 1278 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 1211 1229 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 902 933 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 1023 1039 - -
Cpe07g00648 1372 Pfam LAIKA domain 1104 1170 IPR045353 -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 60 137 - -
Cpe07g00648 1372 MobiDBLite consensus disorder prediction 803 830 - -
Cpe07g00648 1372 PANTHER CCAR1 HOMOLOG 32 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00648 K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 - csv:101205105 1112.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g936 . Blo16g01111 . . Bpe13g01405 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0569 Cone9ag0575 . . . . . . . . . . . Bma06g00700 . . . . . . . . Cpe07g00648 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007311 0 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 2 1 1 0 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00648 Cpe_Chr07 FPKM 11.328441 13.719204 3.341584 3.67495 5.224718 5.108751 6.094968 3.850742 4.179149 3.732593