Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00653 ATGGTATTGTACAGCATTAGATGCTCGCACGGCTGGAGTTTCTTTAGAGCCGTCAAGCCCACCCCCCTTTCTCTCAAAACGAGTATCCACAAGCCCCGCCTCTGCTCTAACATGCCAATACAAAACGTTTATGGAGGCTCAGTTCATCGAGTTTATGATGCATTGCTGTTGGATGCTGGAGGAACGTTATTGCAGTTGGCAAAGCCAGTTGAAGAGACTTACGCATCCATTGGATCCAAATATGGTCTAGTAAGCACTCCTGCTGATATAAAGCAAGGATTTAAGAGGGCATTTTCTGGTCCATGGCCTCAAAAGCTTCGTTACCAGTACTATGCAAATGGTGACGCATGGCATCTTCCACCTGGAGCTTATGCAGCCCTGACCGTTTTGAAAGATGCTGGAGTAAAGGTGGCTGTTGTGTCCAACTTTGACACTCGCTTAAGGAAGCTGTTGAAGGATCTAAATGTGTTAGATATGTTTGATGCTGTCATAATTTCGGCAGAAGTTGGTTATGAAAAACCAGATGGACAAATATTTGAAGCTGCGTTAGGTACAAAAGATGAGGTTGGATGGTTTGTTGTAGATGAACTCGGAGTGGCAGCGAACAAAGCAGTACATGTTGGAGATGATCAGAAGGCAGACAAGGAGGGAGCAAATGGTGTCGGAATAGCTTGCTGGCTATGGGGAAAAGATGTGACGACCTTCCAGGACGTTCAGAACCGAATCCTCATTTGTTCTTGA 741 45.48 MVLYSIRCSHGWSFFRAVKPTPLSLKTSIHKPRLCSNMPIQNVYGGSVHRVYDALLLDAGGTLLQLAKPVEETYASIGSKYGLVSTPADIKQGFKRAFSGPWPQKLRYQYYANGDAWHLPPGAYAALTVLKDAGVKVAVVSNFDTRLRKLLKDLNVLDMFDAVIISAEVGYEKPDGQIFEAALGTKDEVGWFVVDELGVAANKAVHVGDDQKADKEGANGVGIACWLWGKDVTTFQDVQNRILICS 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4822850 4834813 - Cp4.1LG07g06360.1 Cpe07g00653 472460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00653 246 Pfam Haloacid dehalogenase-like hydrolase 104 225 IPR041492 -
Cpe07g00653 246 SFLD Haloacid Dehalogenase 53 228 - -
Cpe07g00653 246 PANTHER F14L17.7 PROTEIN 5 109 - -
Cpe07g00653 246 SUPERFAMILY HAD-like 52 234 IPR036412 -
Cpe07g00653 246 Gene3D - 104 243 IPR023214 -
Cpe07g00653 246 PANTHER - 5 109 - -
Cpe07g00653 246 CDD HAD_dREG-2_like 123 243 - -
Cpe07g00653 246 PANTHER - 108 244 - -
Cpe07g00653 246 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 131 221 IPR006439 -
Cpe07g00653 246 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 53 228 - -
Cpe07g00653 246 PANTHER F14L17.7 PROTEIN 108 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00653 - - - csv:101221840 354.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00453 Cpe-Chr3:2601525 Cpe07g00653 Cpe-Chr7:4822850 1.60E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g897 . Blo16g01120 . Bda11g01221 Bpe13g01415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0595 Cone9ag0598 . . . . . . . Bda11g01221 . . . . . . . . . . . . Cpe07g00653 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006918 1 1 1 0 1 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00653 Cpe_Chr07 FPKM 12.432051 12.116429 11.286537 11.518025 19.888731 17.74227 21.010641 6.480212 7.638216 8.564054