Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00655 ATGGGCATCGTGGACGGAGGCACTCAATCTCAGTCTGCAAATCCGAACATGGTAAGAGAAAAGCCGAAGGTGGTCGTGATTATGGGGCCGACTGGTTCTGGGAAGTCACGTCTCGCCATCGATTTGGCTTCTCACTTCCCCGTCGAGATCATCAACGCTGATTCTATGCAGGTTTATCGCGGCTTGGACGTTCTCACAAACAAAGTTCCTCCCCAAGACCAAAATGGAGTACCGCATCATCTTTTAGGTACAGTGAGTCCAGACGTTGAATTCACGGCTAAAGACTTCCGAGATTCTGCCATTCCCGTTATTGATGACATATTATCACGTGGATGCTTGCCAATGATAGTGGGTGGAACGAATTATTATATACAGGCTCTTTTTAGCCCACTTCTTCTGGATGATTCTACTAAAAATATCGGCGGAAGTTGCTCCAGTTATCTTGGAGATGAGGAGATGGATATTGAGTTGGATGAGGGAAGAGATAGTCTGAAGTATGACCATAGCTATCTTAAAGAGATTGATCCAGTTTCGGCTGGTAGACTCCATCCGAATAACCACCGAAAAATAAATCAATACCTGAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGGAAGGCTGCTGAGAGTTGGGGTCAAGCTGATAGTTTCAGATACGAGTGCTGCTTGATATGTGTCGATGCTTCTATTCCACAAATTGATGGACATGTTGATTCTAGAGTTGATAGCATGTTGGCTGCTGGATTACTTGATGAGGTCTATGACATTTACAATCCAAATGCGAACTATACCAGAGGATTGTGGCAAGCTATTGGTGTTCGGGAGTTTGAAGAGTTTTTGAGGTATTATGTACCTAACGGTAGATGCGACGAAGATAGCAATGAGCTTAGTCCAAAAAATTCAATGGAGTGTAATGAGATTTTGAAAGAGAATATGAGGTCCATCCTAAATTCAACGAGTGCTGGCGAATCCAGTTTTCTACTGAAAGAAGCCATAGATAATGTAAAGTTAAATACTAGAAGACTGGTTCGTCGTCAGCGGAGGCAGATAAAGAGACTGGAAACTTTGTTTGGATGGAAGATCCACTATGTTGATTCCACTGAATATATAACAAGCAAAGTGGAGGATTCATGGACTGCACAAGTCGTTGTACCTGCAGTCCAGATAATTAGGTCGTTCCTTGAAGATTGCTGTTCAGCGACTGAGACAATGAACCCACAGAGTTCTGGGCAAACAATCAAAAAGGACTTGTGGACACAATATGTTTGCCAGGCTTGTGGGAACAAAGTACTAAGAGGAGCACATGAATGGGAACAACACAATCTAGGTCGCTCGCATCGAAAGCGAATGTATCGGCTTAAGAAGCATGAAGGGTCGTCTTTCCTGCAACAGAAACTACCTCAAGAATGCTAT 1428 43.49 MGIVDGGTQSQSANPNMVREKPKVVVIMGPTGSGKSRLAIDLASHFPVEIINADSMQVYRGLDVLTNKVPPQDQNGVPHHLLGTVSPDVEFTAKDFRDSAIPVIDDILSRGCLPMIVGGTNYYIQALFSPLLLDDSTKNIGGSCSSYLGDEEMDIELDEGRDSLKYDHSYLKEIDPVSAGRLHPNNHRKINQYLSLYYRTGVLPSTLFQGKAAESWGQADSFRYECCLICVDASIPQIDGHVDSRVDSMLAAGLLDEVYDIYNPNANYTRGLWQAIGVREFEEFLRYYVPNGRCDEDSNELSPKNSMECNEILKENMRSILNSTSAGESSFLLKEAIDNVKLNTRRLVRRQRRQIKRLETLFGWKIHYVDSTEYITSKVEDSWTAQVVVPAVQIIRSFLEDCCSATETMNPQSSGQTIKKDLWTQYVCQACGNKVLRGAHEWEQHNLGRSHRKRMYRLKKHEGSSFLQQKLPQECY 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5032384 5049872 + Cp4.1LG07g06650.1 Cpe07g00655 472462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00655 476 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 400 - -
Cpe07g00655 476 Hamap tRNA dimethylallyltransferase [miaA]. 24 380 IPR018022 GO:0008033
Cpe07g00655 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 131 IPR027417 -
Cpe07g00655 476 Pfam IPP transferase 57 356 - -
Cpe07g00655 476 Gene3D - 22 423 IPR027417 -
Cpe07g00655 476 Gene3D - 150 211 - -
Cpe07g00655 476 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 400 IPR039657 -
Cpe07g00655 476 Gene3D Classic Zinc Finger 424 465 - -
Cpe07g00655 476 TIGRFAM miaA: tRNA dimethylallyltransferase 24 287 IPR018022 GO:0008033
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00655 Cpe-Chr7:5032384 Cpe08g00236 Cpe-Chr8:1550592 7.27E-17 dispersed
Cpe14g00353 Cpe-Chr14:2153217 Cpe07g00655 Cpe-Chr7:5032384 2.48E-25 dispersed
Cpe07g00655 Cpe-Chr7:5032384 Cpe17g00842 Cpe-Chr17:6547060 2.75E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00655 K00791 - csv:101202758 776.548