Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00669 ATGGCCATGGCTATGGCTACGGCCCATCACAGAGAGAGTGGCGATGGGGGTATCGATGGCCACCTTGATAGCACCGGGAAGTATGTCCGTTACACGACGGAGCAAGTGGAAGCTCTTGAGCGAGTTTATGCGGAATGTCCTAAACCGAGCTCTTTGCGGCGGCAGCAGCTAGTTCGTGATTGCCCCATTTTGGCTAACATCGAGCCAAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAGAAACAGAGGAAAGAGGCTTCTCGTTTACAGTCATTGAATAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAACGATAGGTTACAGAAACAAGTGTCTCAGCTCGTTTGTGAGAATGGGTCTATGCGACAACATTTGCAAACTGCTAACGCTGCAGCAGCACCAATTACTGATGCAAGCTGTGACACAGTGGCTACTGCCCCTCAGCATTTACTTAGAGATGCTAGTAGCCCTGCTGGACTCCTGTCTATTGCAGAGGAGATTTTGGCAGCCTTCCTGTCAAAGGCTACAGGAACTGCTATCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATCTTCGCCGTTTCACAGAGTTGCAGTGGAGTAGCGGCTCGAGCCTGTGGTCTTATTGACGAGATCCTAAAAGATCGTCCATCTTGGTTTCGTGATTGCCGGAGCGTTGAAGTCTTTACGACGTTTCCCACTGGTAATGGTGGGACGATCGAACTTGTTTATACGCAGGTTTACGCTCCGACTACGTTAGCACCTGCACGAGATTTTTGGACTCTAAGATACACGAAAACCTTGGAAAATGGAAATCTTGCAGTTTGTGAGAGATCGCTGTCCGGGTCAGGCACGGGGCCTAATTCAGCTTCTGCTGCTCAGTTCGTGCGAGCCGAAATGCTTCCCAGTGGTTATTTGATTCGTCCTTGCGATGGCGGAGGTTCAATCATCCACATTGTAGATCACCTAAATCTCGAGCCTGGGAGCGTGCCAGAGGTCGTGAGACCACTTTACGAATCGTCAAAGGCCGTCGCTCAGAAAATGACTATAGCAGCTTTTCGCTACGTTAGGCAAGTAGCTCAAGAGACAAGTGGTGAAGTAGTATACAGTTTAGGCAGACAACCGGCCGTTCTTCGAACGTTTAGCCAAAGATTGAGCAGAGGATTTAATGAGGCTGTTAATGGATTTAATGATGATGGATGGTCTTTGATGAACTGTGATGGAGCTGAAGATGTGAGTCTTGCCATAAATTCAAGCAAGAATGTAAATACATCGTATGATCCTGTCAACTCTCTTGCATTCCATGCGGGTGTTCTTTGTGCAAAGGCTTCCATGCTTATACAAAATGTTCCTCCAATTGCTCTAATTCGTTTCTTGAGGGAACATCGATCGGAGTGGGCTGATTTCAATGTCGATGCGTATTCTGCTGCGTCGTTGAAAACTGGTTCGTATGTATACCCGGGCATGAGACCGACCAGGTTTACAGGGAGCCAAATTATCATGCCGCTCGGCCATACAATCGAACAAGAAGAGGGCTTTGCTTACATACCTGCTGGAATTTGCATATCGACTATGGGGCGCCATGCTTCCTTTGAACAAGCCATTGCATGGAAGGTTCTTGCAGAAGACGAGTCCACCGTGCACTGTCTTGCTTTCTCCTTCGTCAACTGGTCGTTCCTATGA 1719 48.52 MAMAMATAHHRESGDGGIDGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGSMRQHLQTANAAAAPITDASCDTVATAPQHLLRDASSPAGLLSIAEEILAAFLSKATGTAIDWVQMPGMKPGPDSVGIFAVSQSCSGVAARACGLIDEILKDRPSWFRDCRSVEVFTTFPTGNGGTIELVYTQVYAPTTLAPARDFWTLRYTKTLENGNLAVCERSLSGSGTGPNSASAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEPGSVPEVVRPLYESSKAVAQKMTIAAFRYVRQVAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNEAVNGFNDDGWSLMNCDGAEDVSLAINSSKNVNTSYDPVNSLAFHAGVLCAKASMLIQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGSYVYPGMRPTRFTGSQIIMPLGHTIEQEEGFAYIPAGICISTMGRHASFEQAIAWKVLAEDESTVHCLAFSFVNWSFL 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5380729 5386667 - Cp4.1LG07g06690.1 Cpe07g00669 472476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00669 572 SUPERFAMILY Homeodomain-like 25 90 IPR009057 -
Cpe07g00669 572 ProSiteProfiles 'Homeobox' domain profile. 22 86 IPR001356 GO:0003677
Cpe07g00669 572 CDD bZIP 79 118 - -
Cpe07g00669 572 CDD homeodomain 27 87 IPR001356 GO:0003677
Cpe07g00669 572 Gene3D - 21 93 - -
Cpe07g00669 572 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 3 523 IPR044830 GO:0003700
Cpe07g00669 572 SUPERFAMILY Bet v1-like 168 373 - -
Cpe07g00669 572 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 522 572 - -
Cpe07g00669 572 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 3 523 - -
Cpe07g00669 572 SMART START_1 168 371 IPR002913 GO:0008289
Cpe07g00669 572 ProSiteProfiles START domain profile. 159 380 IPR002913 GO:0008289
Cpe07g00669 572 Pfam MEKHLA domain 522 571 IPR013978 -
Cpe07g00669 572 Gene3D - 196 375 IPR023393 -
Cpe07g00669 572 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 522 572 IPR044830 GO:0003700
Cpe07g00669 572 Pfam Homeodomain 28 85 IPR001356 GO:0003677
Cpe07g00669 572 Coils Coil 92 123 - -
Cpe07g00669 572 SMART HOX_1 24 90 IPR001356 GO:0003677
Cpe07g00669 572 MobiDBLite consensus disorder prediction 1 22 - -
Cpe07g00669 572 Pfam START domain 169 369 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00487 Cpe-Chr6:2880183 Cpe07g00669 Cpe-Chr7:5380729 0 dispersed
Cpe07g00669 Cpe-Chr7:5380729 Cpe16g00533 Cpe-Chr16:6249568 5.84E-21 dispersed
Cpe07g00669 Cpe-Chr7:5380729 Cpe05g00818 Cpe-Chr5:5072409 1.64E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49769 PF01852 START 3.90E-40 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00669 K09338 - cpap:110820480 880.167