Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00689 ATGTCCACAAGAGGAACACTTCAACCGCTATACAATGGACGTCCTGTTAAGGCTACAGGGTTGATGCGGCATGGTCAGTTTCCTGGATCAGATTCTGCTGGGGGTCACAAGTCTCTTGAATTATTAGAGGATAAATTAGACGTTCAGACATCCGACATAGAAAAACTTGCAAGGGAAAATCGTAAATTGGCAGCCGCTCATGTCACGTTGAGGCAAGAGCTTGTGGCTGCTGAGAAGGAAATACAAAATGCACGAGCACATATCCGAAGTATTCAGACCGAAAGTGATATTCAGATGAGAGTACTGTTGGATAAGATTGCGAAAATGGAAGCAAATATTGAAGCTAGAGAGGGGCTGAAGAAGGACTTGCAACAGGCACACAAGGAGGCTCAAGCCTTGGTCAAAGACAAACAAGAATTGGCCTTCCAAATTCAACAAGAAACTCAGGAGTTGCATAAAACAGGGTCTGATGTTAATAATCTACCCAGTTTACATGCTGAGCTTGAGGATTTGAGGAAAGAACACCAAAGGTTAAGAGTCACATTTGAGCACGAAAAAGGTATGAACGTAGAACAAGTAGAGCAAATGAAAGCAACAGAAATGAATCTGATTGCCTTGGCAAGGGAAGTAGAGAGGTTGCGAGCCGAGGTTTTGAATGCGGAGAAAAGGGCTTATGCACCAAGTGCATACGGTGGTGCGTACGTGAATTTGGACCCTTCGTACCCACCTCGTACCGGTGCCAATGGCTATGTCGATATGTACGGAAGGCCATACATTGCAATGGCTTCTGTGGCTCCAGGAGACGGTCAAATCCCTCACCCCGTTGACAATGGCCCGGTCACCACTGGAACGGTTGCGGGCGTGGCTGCCCCTATCGACAGCATTGCTCGGAGATAA 897 46.71 MSTRGTLQPLYNGRPVKATGLMRHGQFPGSDSAGGHKSLELLEDKLDVQTSDIEKLARENRKLAAAHVTLRQELVAAEKEIQNARAHIRSIQTESDIQMRVLLDKIAKMEANIEAREGLKKDLQQAHKEAQALVKDKQELAFQIQQETQELHKTGSDVNNLPSLHAELEDLRKEHQRLRVTFEHEKGMNVEQVEQMKATEMNLIALAREVERLRAEVLNAEKRAYAPSAYGGAYVNLDPSYPPRTGANGYVDMYGRPYIAMASVAPGDGQIPHPVDNGPVTTGTVAGVAAPIDSIARR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5767205 5772056 - Cp4.1LG07g06870.1 Cpe07g00689 472496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00689 298 Coils Coil 106 140 - -
Cpe07g00689 298 Coils Coil 39 94 - -
Cpe07g00689 298 PANTHER PROTEIN FLX-LIKE 2 1 285 IPR040353 -
Cpe07g00689 298 PANTHER PROTEIN FLX-LIKE 4 1 285 - -
Cpe07g00689 298 Coils Coil 161 181 - -
Cpe07g00689 298 Coils Coil 196 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00689 - - - mcha:111020850 474.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00689 Cpe-Chr7:5767205 Cpe20g00888 Cpe-Chr20:7933474 3.17E-32 dispersed
Cpe07g00689 Cpe-Chr7:5767205 Cpe13g01006 Cpe-Chr13:8289935 9.95E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g715 . Blo16g01158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0640 . . . . . . . . . . . Bma06g00623 . . . . Cma05g00009 . Car05g00007 . Cpe07g00689 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010975 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00689 Cpe_Chr07 FPKM 12.646283 12.317652 2.452629 1.949781 10.480227 8.782142 9.269104 24.523554 24.195957 21.188982