Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe07g00711 | ATGGAGGGCTTTTCGACTTGGAACCAGACAGGTGTGGATGCCCTAATGTCGAGATGCAAACCTGCTGATGATAATGATTCGTTTGATTTTGGAATCTTTAAACAGGCTTTGTCCTCTGGCATTGCGGCATCCAAAAATTTTGTCGGCAAATATTGTTACTGTCTATGGTGGGGCCTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACTTATCCGGCTGAAGTGATCTTTTCTATAGCATTGGCTGTACTTGGTCTCATCCTCTTTGCACTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTCACCATAAGGCTTGAGGAAATGAGGGTGAAAAAGCGTGATTCAGAGCAATGGATGCATCATCGTTTACTGCCACAGGAACTTCGGGAGAGAGTGAGGCGATATGATCAGTACAAGTGGTTGGAGACCCGCGGAGTCGACGAACAGAGTTTGGTTCAAACTCTCCCTAAGGATCTTAGGAGAGATATTAAGCGACATCTTTGTCTCGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAGCATGGATGAGAGGCTGCTTGATGCTATTTGTGAGCGGCTAAAACCGTGTTTGTTTACAGAGTACACGTACATAGTCCGTGAGGGTGATCCAGTCGATGAGATGCTTTTCATTATACGTGGTCGACTCGAGAGTGTGACTACCGATGGTGGGCGAAGCGGATTTTTCAATCGTACCTTCCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACTTGGGCTCTTGACCCGAAATCTGGTTCGAATCTTCCATCTTCGACAAGGACGGTAAAGGCTATTACAGAGGTTGAGGCTTTCGCCCTCGTCGCTGAAGAGTTGAAATTCGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACGTTTCGATTCTACTCGCAACAATGGAGGACATGGGCTGCTTGCTTCATCCAAGCGGCATGGCGTCGATACTCCAAGAGAAAGACTATGGAACTTCGTCAAAAGGAAGAAGTTGCGGCGGAGGAATCCGAGACATCTCAAACGACGACGACCACAAGCGGAGGAGGCTCTTACAGTATTCGTGCAACTTTCCTAGCTTCTAAATTTGCTGCCAATGCTCTCCGAGGCGTTCAGCGATATCGCAACGCAAAGAGCGCTCAGGAGTTGATAAAATTGCAGAAGCCTCCCGAGCCAGATTTTAGCGCGGATGATGCCGATTGA | 1245 | 47.23 | MEGFSTWNQTGVDALMSRCKPADDNDSFDFGIFKQALSSGIAASKNFVGKYCYCLWWGLQNLSTLGQGLQTSTYPAEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKKRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELRQKEEVAAEESETSQTTTTTSGGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD | 414 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5979654 | 5983664 | + | Cp4.1LG07g07140.1 | Cpe07g00711 | 472518 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe07g00711 | 414 | CDD | CAP_ED | 182 | 313 | IPR000595 | - | |
| Cpe07g00711 | 414 | SUPERFAMILY | Voltage-gated potassium channels | 46 | 145 | - | - | |
| Cpe07g00711 | 414 | Gene3D | Jelly Rolls | 180 | 300 | IPR014710 | - | |
| Cpe07g00711 | 414 | Gene3D | Helix hairpin bin | 110 | 173 | - | - | |
| Cpe07g00711 | 414 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 182 | 266 | IPR000595 | - | |
| Cpe07g00711 | 414 | ProSiteProfiles | IQ motif profile. | 318 | 347 | IPR000048 | GO:0005515 | |
| Cpe07g00711 | 414 | SMART | cnmp_10 | 182 | 313 | IPR000595 | - | |
| Cpe07g00711 | 414 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 1 | 411 | - | - | |
| Cpe07g00711 | 414 | SUPERFAMILY | cAMP-binding domain-like | 112 | 302 | IPR018490 | - | |
| Cpe07g00711 | 414 | MobiDBLite | consensus disorder prediction | 343 | 363 | - | - | |
| Cpe07g00711 | 414 | PANTHER | NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED | 1 | 411 | - | - | |
| Cpe07g00711 | 414 | Pfam | Ion transport protein | 43 | 108 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Cpe07g00711 | 414 | Pfam | Cyclic nucleotide-binding domain | 207 | 292 | IPR000595 | - | |
| Cpe07g00711 | 414 | Gene3D | - | 15 | 107 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe07g00711 | Cpe-Chr7:5979654 | Cpe05g00607 | Cpe-Chr5:3693807 | 0 | dispersed | |
| Cpe09g00035 | Cpe-Chr9:216208 | Cpe07g00711 | Cpe-Chr7:5979654 | 1.53E-36 | dispersed | |
| Cpe11g00844 | Cpe-Chr11:6853912 | Cpe07g00711 | Cpe-Chr7:5979654 | 1.93E-33 | wgd | |
| Cpe18g00596 | Cpe-Chr18:6342951 | Cpe07g00711 | Cpe-Chr7:5979654 | 9.20E-171 | wgd | |
| Cpe04g01281 | Cpe-Chr4:10588515 | Cpe07g00711 | Cpe-Chr7:5979654 | 3.16E-174 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe07g00711 | K05391 | - | csv:101219180 | 751.895 |