Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00725 ATGAGGCTTTTCATTCTCAATTCGATTTATAGTGCCTCCAAATCTTATTTGAATCCGTGCTCATTTCAATATTGCAAGTCTTACACAAAGATTTCTGAGTATGTTAACCGAGTTCTTAGACCGAGTGTTGTTCTAAATAAACAATACTACAAAGATGAATCTCACAGCTTGAAGAACGTCTCACGTACTGGTTTCCTAAGAGCACCCTCTGTATGTCGTCTACACACACCAAGTTATGGTACACATCCCGCTGCTACTTTTTCCCCCGCATCTCCAGTGAAATATTGGAACACTATCCCTCCTACGTCTCTTGGCTATCTGTCAAACCCTCGATTCTATTCATCGACTTCTAGCAGGAAAGCGGATATTACTGGAGATACTGGTGTTCCACTAGCTTCCTCTGGTGTTGAAGCAGATATCAGTAACCCCCCCGATGTTGGAAGAGACTGGCTTGAAAGAGTCAAGGATGGTTGGCAGAGTGCTGTCGATGCAGCATCTTTTACCGGACAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGATCCTAGATTCACATCCATATCTGAAAAATGAAATTGCTCCTGTTGGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCACAAGTATTCAATGCGAAGTCCTGTTGCCATACTTTCTGGAAGCACATCAATTGAGGAAATTCCCTATGAGAAAAGCTTTTGGGGTGCCTTAGAGGATCCTTTGCGATATCTTGTTACCTTCTATGCATTTTCTCAAATTGGCAAGATGGTTGCACCAACTGCCATAGCATCAGAGTTTGTATCACAGGCGTGCAGGGGGGCTGTCATCCTTTCTCTTGTATGGTTTATTTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGGCCTCCCAAAATTTTTCAGGGCTTGATCGGGAAAAGTTACTTACCCTCGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGATATACTTGGAAATGTTTTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGCCAAGTGATTGAAATGGGCCTCATGACGACATCATTATTAAGTGCTGAAAAATTCCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGCCAGGTAATTATAAACAAGTCGCGGGCGCAATGGCGTGCAATCACAAAGAAAATTCCTTTCCAAGTTGCTGATTTTAGTACGGTTTCTAAGATATCAGATGATATTAAGAGTATGCTTAGGTCTCACCCTAAGGGTAAAGAAGAACTTTTCTCTACAGAGCAAGATATTCTCCTCCAGTCAGTACAGATCATGAAAGAAAATGGTGCAACCTTGGGTAACTGA 1509 42.54 MRLFILNSIYSASKSYLNPCSFQYCKSYTKISEYVNRVLRPSVVLNKQYYKDESHSLKNVSRTGFLRAPSVCRLHTPSYGTHPAATFSPASPVKYWNTIPPTSLGYLSNPRFYSSTSSRKADITGDTGVPLASSGVEADISNPPDVGRDWLERVKDGWQSAVDAASFTGQKAREVSDEFSPHVDKILDSHPYLKNEIAPVGMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSTSIEEIPYEKSFWGALEDPLRYLVTFYAFSQIGKMVAPTAIASEFVSQACRGAVILSLVWFIYRWKTNVFSRALASQNFSGLDREKLLTLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNVLSGLTMQFSQPFSLGDTIKAGAIEGQVIEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPFQVADFSTVSKISDDIKSMLRSHPKGKEELFSTEQDILLQSVQIMKENGATLGN 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6161195 6165454 - Cp4.1LG07g07250.1 Cpe07g00725 472532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00725 502 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 90 473 - -
Cpe07g00725 502 SUPERFAMILY Sm-like ribonucleoproteins 370 435 IPR010920 -
Cpe07g00725 502 Gene3D - 386 434 IPR023408 -
Cpe07g00725 502 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 90 473 - -
Cpe07g00725 502 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 287 369 IPR011014 GO:0016020
Cpe07g00725 502 Pfam Mechanosensitive ion channel 328 475 IPR006685 GO:0016020|GO:0055085
Cpe07g00725 502 Gene3D - 282 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00725 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101220483 754.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00725 Cpe-Chr7:6161195 Cpe14g00646 Cpe-Chr14:4178988 2.03E-09 dispersed
Cpe07g00725 Cpe-Chr7:6161195 Cpe11g00479 Cpe-Chr11:2754517 3.40E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00725 . 149 501 Mechanosensitive Ion Channel Family AT4G00290 63.0 5.1e-133 471.9
Cpe14g00646 . 64 727 Mechanosensitive Ion Channel Family AT5G10490 59.8 4.0e-197 685.3
Cpe11g00479 . 10 701 Mechanosensitive Ion Channel Family AT5G10490 55.4 8.9e-189 657.5
Cpe07g00169 . 61 698 Mechanosensitive Ion Channel Family AT5G10490 52.9 1.8e-173 606.7
Cpe11g00479 . 10 681 Mechanosensitive Ion Channel Family AT1G58200 57.0 1.6e-198 689.9
Cpe14g00646 . 6 696 Mechanosensitive Ion Channel Family AT1G58200 52.2 1.2e-177 620.5
Cpe07g00169 . 10 514 Mechanosensitive Ion Channel Family AT1G58200 59.8 1.4e-170 597.0
Cpe16g00335 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 56.0 1.1e-263 906.7
Cpe16g00335 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 52.5 1.5e-246 849.7
Cpe16g00335 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 58.7 9.3e-284 973.4
Cpe04g00610 . 65 911 Mechanosensitive Ion Channel Family AT1G78610 51.3 1.5e-225 780.0
Cpe16g00335 . 229 933 Mechanosensitive Ion Channel Family AT2G17000 59.6 1.1e-233 807.0
Cpe04g00610 . 270 905 Mechanosensitive Ion Channel Family AT2G17000 56.0 2.0e-193 673.3
Cpe02g00286 . 69 720 Mechanosensitive Ion Channel Family AT5G19520 50.7 1.4e-174 610.5
Cpe18g00332 . 58 753 Mechanosensitive Ion Channel Family AT5G12080 54.2 3.1e-203 705.7
Cpe02g00286 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-188 655.6
Cpe04g01033 . 104 797 Mechanosensitive Ion Channel Family AT5G12080 51.0 4.2e-184 642.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00725 Cpe_Chr07 FPKM 3.557652 4.417419 18.025009 17.663052 2.513899 2.199275 2.104764 2.244671 1.701666 1.972359