Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00725 ATGAGGCTTTTCATTCTCAATTCGATTTATAGTGCCTCCAAATCTTATTTGAATCCGTGCTCATTTCAATATTGCAAGTCTTACACAAAGATTTCTGAGTATGTTAACCGAGTTCTTAGACCGAGTGTTGTTCTAAATAAACAATACTACAAAGATGAATCTCACAGCTTGAAGAACGTCTCACGTACTGGTTTCCTAAGAGCACCCTCTGTATGTCGTCTACACACACCAAGTTATGGTACACATCCCGCTGCTACTTTTTCCCCCGCATCTCCAGTGAAATATTGGAACACTATCCCTCCTACGTCTCTTGGCTATCTGTCAAACCCTCGATTCTATTCATCGACTTCTAGCAGGAAAGCGGATATTACTGGAGATACTGGTGTTCCACTAGCTTCCTCTGGTGTTGAAGCAGATATCAGTAACCCCCCCGATGTTGGAAGAGACTGGCTTGAAAGAGTCAAGGATGGTTGGCAGAGTGCTGTCGATGCAGCATCTTTTACCGGACAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGATCCTAGATTCACATCCATATCTGAAAAATGAAATTGCTCCTGTTGGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCACAAGTATTCAATGCGAAGTCCTGTTGCCATACTTTCTGGAAGCACATCAATTGAGGAAATTCCCTATGAGAAAAGCTTTTGGGGTGCCTTAGAGGATCCTTTGCGATATCTTGTTACCTTCTATGCATTTTCTCAAATTGGCAAGATGGTTGCACCAACTGCCATAGCATCAGAGTTTGTATCACAGGCGTGCAGGGGGGCTGTCATCCTTTCTCTTGTATGGTTTATTTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGGCCTCCCAAAATTTTTCAGGGCTTGATCGGGAAAAGTTACTTACCCTCGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGATATACTTGGAAATGTTTTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGCCAAGTGATTGAAATGGGCCTCATGACGACATCATTATTAAGTGCTGAAAAATTCCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGCCAGGTAATTATAAACAAGTCGCGGGCGCAATGGCGTGCAATCACAAAGAAAATTCCTTTCCAAGTTGCTGATTTTAGTACGGTTTCTAAGATATCAGATGATATTAAGAGTATGCTTAGGTCTCACCCTAAGGGTAAAGAAGAACTTTTCTCTACAGAGCAAGATATTCTCCTCCAGTCAGTACAGATCATGAAAGAAAATGGTGCAACCTTGGGTAACTGA 1509 42.54 MRLFILNSIYSASKSYLNPCSFQYCKSYTKISEYVNRVLRPSVVLNKQYYKDESHSLKNVSRTGFLRAPSVCRLHTPSYGTHPAATFSPASPVKYWNTIPPTSLGYLSNPRFYSSTSSRKADITGDTGVPLASSGVEADISNPPDVGRDWLERVKDGWQSAVDAASFTGQKAREVSDEFSPHVDKILDSHPYLKNEIAPVGMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSTSIEEIPYEKSFWGALEDPLRYLVTFYAFSQIGKMVAPTAIASEFVSQACRGAVILSLVWFIYRWKTNVFSRALASQNFSGLDREKLLTLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNVLSGLTMQFSQPFSLGDTIKAGAIEGQVIEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPFQVADFSTVSKISDDIKSMLRSHPKGKEELFSTEQDILLQSVQIMKENGATLGN 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6161195 6165454 - Cp4.1LG07g07250.1 Cpe07g00725 472532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00725 502 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 90 473 - -
Cpe07g00725 502 SUPERFAMILY Sm-like ribonucleoproteins 370 435 IPR010920 -
Cpe07g00725 502 Gene3D - 386 434 IPR023408 -
Cpe07g00725 502 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 90 473 - -
Cpe07g00725 502 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 287 369 IPR011014 GO:0016020
Cpe07g00725 502 Pfam Mechanosensitive ion channel 328 475 IPR006685 GO:0016020|GO:0055085
Cpe07g00725 502 Gene3D - 282 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00725 Cpe-Chr7:6161195 Cpe14g00646 Cpe-Chr14:4178988 2.03E-09 dispersed
Cpe07g00725 Cpe-Chr7:6161195 Cpe11g00479 Cpe-Chr11:2754517 3.40E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00725 K22047 - csv:101220483 754.977