Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00759 ATGGATAACATTCTCGACGAGTATCTGAAATATTGGGAAACGGACATGTTTCTGCTGACGGAAGACTCCGGCAGCGGCGGGTGGGGACTGGAGGAAGCATTTTACGGTGCTTACAATTCGAGCTCGCCGGAGGGGAAGGTGTCGCCGTCGTCGCCGTCGGAGGCGTCGAAGAATATCGTATCGGAGAGAAACCGGAGAAAGAAGCTTAACGATAGGCTTATTGCTCTCCGAGCTGTGGTCCCCAATATCACCAAAATGGATAAGGCGTCAATAATAAAAGATGCGATTGCATACATCCAAGAGCTGCGAGCGGAAGAGAAGAGAATCGAAACAGAAATTTTCAATCTAGAATCAAGCGTAAACAACGAGAGATCAAGAACCACAAATCAATGGAACAACGAAAATGGAGATCAAATTTGGACGAACATGAAATGGAATCAGCAAACAACCGACGCTTCATCGTCTTCCTCGATCAAAGTTCTCGATTTGAGTGTGAATTACGTGGGCGAGAAGGTGATGGTGGTGAGTTTAACGTGCTTACGTAGAGGCGACACGATATTGAAGGTTTGGGAAGTGATTGAATCGCTGAAGTTGAAGATCATTACCGCTAATATCAGTGTCATCGCAAACAAGCTCTTGAACACGCTCTTCATTGAGGCCGAGAGAGAAGAAGAAGAGGAATTGAAGGTACAAATAGAAACCGCCATTGCACATATGGGTTGA 723 45.92 MDNILDEYLKYWETDMFLLTEDSGSGGWGLEEAFYGAYNSSSPEGKVSPSSPSEASKNIVSERNRRKKLNDRLIALRAVVPNITKMDKASIIKDAIAYIQELRAEEKRIETEIFNLESSVNNERSRTTNQWNNENGDQIWTNMKWNQQTTDASSSSSIKVLDLSVNYVGEKVMVVSLTCLRRGDTILKVWEVIESLKLKIITANISVIANKLLNTLFIEAEREEEEELKVQIETAIAHMG 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6626873 6629996 + Cp4.1LG07g07570.1 Cpe07g00759 472566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00759 240 PANTHER TRANSCRIPTION FACTOR BHLH35 2 238 - -
Cpe07g00759 240 Coils Coil 218 238 - -
Cpe07g00759 240 Coils Coil 92 119 - -
Cpe07g00759 240 SMART finulus 59 108 IPR011598 GO:0046983
Cpe07g00759 240 Pfam Helix-loop-helix DNA-binding domain 60 102 IPR011598 GO:0046983
Cpe07g00759 240 Gene3D - 48 122 IPR036638 GO:0046983
Cpe07g00759 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Cpe07g00759 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 238 - -
Cpe07g00759 240 MobiDBLite consensus disorder prediction 41 62 - -
Cpe07g00759 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 118 IPR036638 GO:0046983
Cpe07g00759 240 MobiDBLite consensus disorder prediction 41 58 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01327 Cpe07g00759 CCT
Cpe07g00759 Cpe11g00612 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00759 Cpe-Chr7:6626873 Cpe16g00502 Cpe-Chr16:6064235 1.17E-22 dispersed
Cpe11g00612 Cpe-Chr11:3860199 Cpe07g00759 Cpe-Chr7:6626873 3.89E-95 wgd
Cpe18g00640 Cpe-Chr18:6587133 Cpe07g00759 Cpe-Chr7:6626873 3.48E-70 wgd
Cpe04g01327 Cpe-Chr4:10890505 Cpe07g00759 Cpe-Chr7:6626873 7.86E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49775 PF00010 HLH 2.90E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00759 - - csv:101203107 272.322