Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00787 ACGTCAGGCTCGTTAAAACCCGTAGTTGTGAGCCTTCTCCGGAAATCCATCGCCCCCATTGAAACTCCCATTCAGTCTTCAACCTTCTTACCTACAATGGCTATCACCCAATTCGCCATGGTGGAGGAGTTGGCCTTCCTTGTGAAGGAAAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGACGTCTTCGTCAATTCGGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTATTGCATCGCCTTGCTGATATTTTTGGATTTTCCCATGTATCAGTTGGTGAAGGAGTTGATAGGCACTTGGTTTTGGAGCGATGCCCAGAGTCATCAATGCCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTACGATGAACCTCAAATTTCAACAATACCACACCAACTGTTAAGGAGAAAGGAAAACTCTTCTGTGAGTTTGAAGAAATCACCTCCTCAACGGTCTTTCGAAGAGAGAGAAGCAGCCTATCTGGCTGTTCGTGAGCGAATTTTCATGATGCACATAGGAGAAGACAGTGAACCTGAGAAGCCAAAGCCACGCTGTGATCCCGTGGTTGCACGCCGCATGATTGCACATGCACTGGGGAAGAGAATAAATTCATCTCCTGAAGCTACTTCCAACCATAGCAAAGAGCAAGGAAGTGTAGCTAACAACGCATACGTCCAAGCAAATGAATTGAAGGAGCCTGATTCTACTGTGGAAGTTGTTAACAAAACCAAGTTGCAGCCAGATCAATGTGTGAACTCAAAGAACGAAGCGGGTAAGAATCGTAATCCAATTCGGTCATCAGCAAGGGGAAGTAATGCTGCTGCTCCCAAAATGAAAGCAGACAAGAGTTCTCCTAAGGCAAGTTGTGTTGACAATGAGTACTTGAAGAGGGAACATTTAGGAGCAGCAAAGCGGATGTTTTCTCAGGCTTTGGGCAAGCAGAGCCGGAAGAATGAGTCTCTTCCAACACGGTGA 999 45.85 TSGSLKPVVVSLLRKSIAPIETPIQSSTFLPTMAITQFAMVEELAFLVKENLPSKHLILSMEDVFVNSDGILELEPMDSYNRLLLHRLADIFGFSHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLKKSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSSPEATSNHSKEQGSVANNAYVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPIRSSARGSNAAAPKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPTR 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7000128 7004430 - Cp4.1LG07g07910.1 Cpe07g00787 472594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00787 332 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 34 328 - -
Cpe07g00787 332 SMART R3H_4 34 112 IPR001374 GO:0003676
Cpe07g00787 332 Pfam SUZ domain 144 177 IPR024771 -
Cpe07g00787 332 Gene3D - 33 149 IPR036867 GO:0003676
Cpe07g00787 332 PANTHER RNA-BINDING SUPPRESSOR OF PAS KINASE PROTEIN 1 34 328 - -
Cpe07g00787 332 ProSiteProfiles SUZ domain profile. 116 180 IPR024771 -
Cpe07g00787 332 SUPERFAMILY R3H domain 47 145 IPR036867 GO:0003676
Cpe07g00787 332 CDD R3H_encore_like 54 112 - -
Cpe07g00787 332 MobiDBLite consensus disorder prediction 250 297 - -
Cpe07g00787 332 ProSiteProfiles R3H domain profile. 48 113 IPR001374 GO:0003676
Cpe07g00787 332 MobiDBLite consensus disorder prediction 250 277 - -
Cpe07g00787 332 Pfam R3H domain 65 110 IPR001374 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00787 - - - csv:101211053 451.055
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g824 . . . . . . . . . . . . . . . Cpe07g00787 . . . . . . . . . . . . . . . Cone5ag0927 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008321 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00787 Cpe_Chr07 FPKM 13.021422 14.938073 13.772354 13.582119 22.153639 21.055874 18.591908 14.124116 13.074156 15.44072