Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00789 ATGCCCATGGAGGAGCTACTTGAACTCAAACACCCAACCGTGTGGCTAGAATTTGAGAAGGGTTTGATTGATGAGGCAGAGCTGGAAAAAAAATTCTTTAAAGATGGGCGAGCTGTTGATTTTGAAGGCCTCAAAAGCTGTATGATAAGTGGTTACTCCTACCTAGAAGGCATTGAAGAATTGCTAAATGCACTAAAAGAGAAAAACTATGAAATGCATGCCTTCACAAACTATCCTATTTGGTACGAAATGATCGAGGCGAAGCTGAAAATCTCGAGATATCTATCGTGGACGTTCTGCTCTTGTAAAAACGGAAAGAGGAAGCCGGATCCTGATTTCTACTTGGAAGCCCTGAGACATCTTGAAGTTGAGCCAGCTAGCTGTATTTTCATTGATGACAGGCTTACATTTCAGAAGTGCAGACTTACTACTACAGGATCTCTGTCGTCTGGGACTCGATATTTCACCCGATATTCATCGCCTGAACTCGGCAGCGTCGACATGAACGTACCGAACACGTTGCTG 525 43.62 MPMEELLELKHPTVWLEFEKGLIDEAELEKKFFKDGRAVDFEGLKSCMISGYSYLEGIEELLNALKEKNYEMHAFTNYPIWYEMIEAKLKISRYLSWTFCSCKNGKRKPDPDFYLEALRHLEVEPASCIFIDDRLTFQKCRLTTTGSLSSGTRYFTRYSSPELGSVDMNVPNTLL 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7012593 7022542 - Cp4.1LG07g07920.1 Cpe07g00789 472596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00789 175 Gene3D - 2 137 IPR023214 -
Cpe07g00789 175 PANTHER ALPHA-D-GLUCOSE 1-PHOSPHATE PHOSPHATASE 1 135 - -
Cpe07g00789 175 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 89 134 IPR006439 -
Cpe07g00789 175 Pfam Haloacid dehalogenase-like hydrolase 53 134 IPR041492 -
Cpe07g00789 175 SUPERFAMILY HAD-like 13 135 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00789 K20860 FHY1; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] - csv:101210563 246.128
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g823 . . . . . . . . . . . . . . . Cpe07g00789 . . . . . . . . . . . . . . . . . . Cone3ag0649 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006997 1 1 2 2 2 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00789 Cpe_Chr07 FPKM 13.859942 14.912228 9.440841 10.024259 6.125403 7.574065 5.010511 19.053968 21.771088 19.049019