Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00798 ATGGGGACAGAGCTTATACGAGTTTCTGTGGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTCGAGTCATATATATCATTTCCTCTAGGGAAAGTGCACAATCATGAAAAAGCTCACGTCCCAGTTAGTTTGCCGACCATCTCCGAGTCACAACCAGTTAAAGTGGAAACTGAGGTAGAAATTGCCGATGTTCCAAAAGTAACAAGGGCCCTCCGACGTAAACCATGTATAAACTACAGACAATTTGAGTACTGTTCCGACGACAAGCTTGATACTAAGCGCGTTGATCAGAATTTTTCGTCAAGGCCGCCTCTTTCGAAGGGGGTCATCCGTGGATGTCCTCAATGTAATAATTGCCAAAAGGTTGTTGCGAGATGGCGTCCAGAAGAATCCTGCCGGCCGGACCTTGAGGCCGCTCCTGTGTTTTACCCAAATGAAGAGGAATTTGAAGATACTTTGACATATATAGCAAGCATACGAACAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCGCCATCTTCTTGGAAACCTCCATGCCCGCTGAAGCAGAAACATATTTGGGAGAATTCTAAATTTGCAACTCGTGTCCAAAGGATCGATAAGCTTCAGAATCGGGATTCAATAAGAAAGAACTTTAGAGTTTGCAATCAAATGAGACGGAAAAGGAGGAGGGTTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGAAAAAATGAAGATGCGGGGTCTCGTGCGACAGAAAGATTTGGATTTGATCCTGGTACAGATTTTACTTTAGAATCGTTTAAAAAATATGCCGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCCATGATACCGCTAAGGGATGTAATCCCTCCATGCTGCAAGAGAACGAGCATTGGAAACCGTCTGTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAGCCAACGGAAGAGATCGAGGTGCTCTATGGGGCTGATTTAGAAACTGGAGAGTTCGGCAGCGGTTTTCCGAAGAGTTGCTGTCAAGAGGGCTATACATCAGATGACGATAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCCGGTTCGGTCCTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAATTACTTGCACTGGGGAGATCCCAAAGTATGGTACGGAGTTCCAGGAAACGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGATCTCTTCGACGAACAACCCGATTTACTTCATAAATTGGCAAGTTTCTTCCCTAATTTAAAGTGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCGGGATTCAACAGTGGTTTCAATTGTGCCGAGGCAGTTAATGTAGCTCCGGTTGACTGGTTGCCCCATGGTCAAATCGCCGTAGAATTATATCGTGAGCAGGGACGAAGAACTACTATTTCCCACGATAAACTATTGCTCGGTGCAGCGAGGGAAGCTGTGAGAGCACACTGGGAGCTTAATTTACAGAAAAGAAACACTTTGGATAACTTAAGATGGAATAATGTTTGTGGAAAAGATGGAGTCCTAGCAAGAGCATTCAAGACACGTGTTGAGCTGGAGTGTGCACGGAGGAACATTCCGTGCAGTTCTTCTCGGGCAATGAAGATGGAAAGCAACTTTGATGCCTCTAATGAGAGGGAATGCAGTTCATGCCTCTTTGACTTGCATCTATCTGCAGTTGGGTGCCGTTGTTCACCAGATAAGTATGTGTGCTTGAATCATGCAAACCAGTTGTGTTCTTGTGCATGGGAAGAGAAATTTTTTCTCTTTCGTTATGATATCAGTGAATTGAACATACTTCTTGAAGCATTGGAAGGAAAGTTAAGTGCAATATACAGGTGGGCTAGGCAGGATCTCGGTTTGGCGCTTAGTTCATCGAGGGAGTTGAATTCTCAATCATCAACCAAGTCGTTCGTGAATTCTCGGTTGGAAGATTTCTTGATTCGATCTTCATTATTGCCAACTCTAACTGCTATTGACAGCCCGTCTCACCGTGCCGAAAAGGTATCCGAAGTTACTGCTTCATATCTAGAAGATAAGAAGGTAGTTTCTACACTTAATGGATCTGGGAAGGAAGTCGAGCAGAAAAATCGTAAATCTGAGGTGAAAAGCGAAAACCATGAACTCGTGTCAACCAATACAAATGCTCTGAATTTGGTAGAAGCGAAAAGTCGAATGCATAAAACGTGTCCTGAAAATGTCATTCTACTAAGTGATGATGAAGGCGATGAGTATAAGAAGACGATTTCAAATGGTTTAGCTGAAAGTTCCGATCGGTTCGCTGAGGTTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCAATCTTGCGTACCCCGGTGACCGATGCAACAACCATGGTCGAAAAGGAAGACAGGACATCGAATAGTTGTCAATCGAGCGTTGAACCTTTAAATAATAAACAGTCTCCAAACGCGGTTAGAAATGCAGCTAATGCCGTTCAGAACAATAGTTTTTCAGAAGTCGGATTAGGTCATAGTAATATATTATTTCGAGCTTCAACGGACACTGATTCTCAAAAACCACAAATGTGTAGCTCTGGAAAACCGATCGAGGCTAAGCCGGGAAACGTCGGAACAAGCGCTACTTCTTGTGCTAATGTGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCGAAGGTCGTTCGGAGGATTAACTGCAATGTCGAGCCTTTAGAATATGGAAACGTGATCTCGGGAAAGTCTTGGTCGAACAGTCGGGCCATTTTTCCAAAAGGATTTAAGAGCCGGGTCAAGTATATAAGCGTTTTAGATCCGTCAACTGTATGTTACTACGTTTCTGAAATTCTCGATGTTGGACGGGACGGACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTTTCTGCTTGCAGATGTTGGGAGTTGGTTAGAAACCGAGTCAATCACGAAATCGCGAAGCAACATAAGTTGGGTCGAACAAATCTCCCTCCTCTACAGCCTCCCGGGAGCTTAGATGGGTTAGAAATGTTCGGGTTTACCTCACCGGCAATTGTTCAGGCCATTGAGGCGATTGATCAAAATCGAGTATGTTGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCGTGTACACAATCCACAACTATCTCAGTCGACAGAAATTAGTCGAAACTTGCAAACAACCGAAAGGAATCACGAGGCCAATCCTAGGCCTAGTAGAGTCGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCCGGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGTCAACAGTTGATCGAGACGTGCTGACTCTTCTTAACGAAGAGATTCAAAGTCATCGCAGATGA 3543 43.72 MGTELIRVSVEEDSDDFPSVPPGFESYISFPLGKVHNHEKAHVPVSLPTISESQPVKVETEVEIADVPKVTRALRRKPCINYRQFEYCSDDKLDTKRVDQNFSSRPPLSKGVIRGCPQCNNCQKVVARWRPEESCRPDLEAAPVFYPNEEEFEDTLTYIASIRTKAEPYGICRIVPPSSWKPPCPLKQKHIWENSKFATRVQRIDKLQNRDSIRKNFRVCNQMRRKRRRVNRKGVDVTTLNGKNEDAGSRATERFGFDPGTDFTLESFKKYADDFKSQYFSKPLHDTAKGCNPSMLQENEHWKPSVENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSCCQEGYTSDDDKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFDEQPDLLHKLASFFPNLKWCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLQKRNTLDNLRWNNVCGKDGVLARAFKTRVELECARRNIPCSSSRAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHANQLCSCAWEEKFFLFRYDISELNILLEALEGKLSAIYRWARQDLGLALSSSRELNSQSSTKSFVNSRLEDFLIRSSLLPTLTAIDSPSHRAEKVSEVTASYLEDKKVVSTLNGSGKEVEQKNRKSEVKSENHELVSTNTNALNLVEAKSRMHKTCPENVILLSDDEGDEYKKTISNGLAESSDRFAEVDSKASLCNYNENAILRTPVTDATTMVEKEDRTSNSCQSSVEPLNNKQSPNAVRNAANAVQNNSFSEVGLGHSNILFRASTDTDSQKPQMCSSGKPIEAKPGNVGTSATSCANVDRFLRQKGPRMAKVVRRINCNVEPLEYGNVISGKSWSNSRAIFPKGFKSRVKYISVLDPSTVCYYVSEILDVGRDGPLFMVVLEHCPSEVFVHVSACRCWELVRNRVNHEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAIDQNRVCCEYWDSRPYSRPRVHNPQLSQSTEISRNLQTTERNHEANPRPSRVDIVLRGLLKKANPEELNSLYTLLNDNRSTVDRDVLTLLNEEIQSHRR 1180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7116516 7126940 - Cp4.1LG07g08000.1 Cpe07g00798 472605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00798 1180 MobiDBLite consensus disorder prediction 1101 1124 - -
Cpe07g00798 1180 Pfam F/Y-rich N-terminus 959 1000 IPR003888 GO:0005634
Cpe07g00798 1180 MobiDBLite consensus disorder prediction 742 764 - -
Cpe07g00798 1180 PANTHER JUMONJI 14-RELATED 756 1177 - -
Cpe07g00798 1180 PANTHER JUMONJI 14-RELATED 87 709 - -
Cpe07g00798 1180 SMART fyrc_3 1009 1103 IPR003889 GO:0005634
Cpe07g00798 1180 Pfam C5HC2 zinc finger 603 653 IPR004198 -
Cpe07g00798 1180 Gene3D - 952 1089 - -
Cpe07g00798 1180 Pfam F/Y rich C-terminus 1007 1091 IPR003889 GO:0005634
Cpe07g00798 1180 ProSiteProfiles JmjC domain profile. 356 513 IPR003347 -
Cpe07g00798 1180 ProSiteProfiles FYR domain FYRC motif profile. 1005 1095 IPR003889 GO:0005634
Cpe07g00798 1180 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Cpe07g00798 1180 SMART cupin_9 356 513 IPR003347 -
Cpe07g00798 1180 PANTHER LYSINE-SPECIFIC DEMETHYLASE 756 1177 - -
Cpe07g00798 1180 PANTHER LYSINE-SPECIFIC DEMETHYLASE 87 709 - -
Cpe07g00798 1180 SUPERFAMILY Clavaminate synthase-like 357 540 - -
Cpe07g00798 1180 SMART fyrn_3 959 1003 IPR003888 GO:0005634
Cpe07g00798 1180 SMART JmjN_1 141 182 IPR003349 -
Cpe07g00798 1180 ProSiteProfiles FYR domain FYRN motif profile. 945 1003 IPR003888 GO:0005634
Cpe07g00798 1180 MobiDBLite consensus disorder prediction 747 761 - -
Cpe07g00798 1180 MobiDBLite consensus disorder prediction 1100 1128 - -
Cpe07g00798 1180 Pfam JmjC domain, hydroxylase 389 496 IPR003347 -
Cpe07g00798 1180 Pfam jmjN domain 143 176 IPR003349 -
Cpe07g00798 1180 MobiDBLite consensus disorder prediction 898 922 - -
Cpe07g00798 1180 Gene3D Cupin 127 497 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00798 - - - csv:101208186 1945.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00798 Cpe-Chr7:7116516 Cpe20g00587 Cpe-Chr20:3572938 0 dispersed
Cpe17g00909 Cpe-Chr17:7033221 Cpe07g00798 Cpe-Chr7:7116516 4.39E-179 transposed
Cpe11g00682 Cpe-Chr11:4718880 Cpe07g00798 Cpe-Chr7:7116516 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00798 . 1 1179 JUMONJI Transcription Factor Family AT1G08620 52.1 0.0e+00 1191.4
Cpe09g00704 CCT 34 583 JUMONJI Transcription Factor Family AT1G08620 59.4 1.6e-188 657.5
Cpe09g00704 CCT 21 668 JUMONJI Transcription Factor Family AT1G30810 56.7 2.4e-212 736.1
Cpe09g00704 CCT 29 668 JUMONJI Transcription Factor Family AT2G34880 50.9 2.4e-188 656.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49777 PF02373 JmjC 9.60E-34 CL0029 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00798 Cpe_Chr07 FPKM 1.449005 1.697252 2.323467 2.439488 8.801737 10.317633 10.139518 7.304569 7.110578 6.285803