Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00820 ATGTATTACCAAATCCCTATAAATAAAGAGCCATTCCCACTATTCCACAAAGCACATTGCAAGCTTCATTTTTTAAGCTCTTTCTTTGATTCCCCAATGGAGAGTCCTTCAACTTTAGGTCTCATTTTGTTGCTTATTGGTAGCTTGGTTTGTCAAGCACAAGCTAGAGCTTTTTTCGTGTTCGGTGACTCTTTGGTCGACAACGGAAACAATGACTACTTGCTCACCACGGCACGAGCCGATAACTACCCGTATGGTATCGACTACCCGACTCGTCGACCCACCGGACGTTTCTCCAATGGCTACAACATACCTGATCTCATCAGTCAAGCCATTGGGTCTCAATCTACTTTGCCTTATTTGAGCCCTCAACTTAGGGGTCAAAACCTTTTGGTTGGTGCCAATTTTGCTTCTGCTGGCATTGGAATCCTCAATGACACCGGAATTCAGTTTTTGAACATAATAAGAATCACGCAACAATTGGAGTATTTCAGGCAATACCAAGCAAGAGTGAGCGCACTAATAGGAGAAGAAGAAGCAAGGAGGCTTGTTAATGGCGCATTGATTCTCATAACATTGGGAGGCAATGACTTTGTAAACAACTATTATTTGGTGCCAATGTCAGCTCGTTCACGCCAGTTTGCTCTTCCTGATTATGTTGTCTATATCATCTCTGAGTATCGCAAAATCTTAGCGAGGCTATACGAGTTGGGAGCTCGACGGGTGTTGGTGACGGGAACCGGGCCACTAGGGTGTGTGCCGGCGGAGTTGGCTATGAGGAGCAGAAATGGTGAGTGCTCAGTGGAGCTGCAACGAGCAGCAGGCCTGTTCAATCCACAGCTGGTTCAAATTATCAACTCACTCAACGCTGAAATTGGGTCCGAGGTCTTTATTGCTGTCAATACTCAAATGATGCACATGGATTTTGTCTCTAACCCTCAAGCCTATGGGTTTGTAACTTCAAAGGTGGCTTGCTGTGGGCAAGGGCCATACAATGGGATAGGACTATGCACTCCAGCCTCCAACTTGTGCCCTAACAGAGACCTCTATGCATTTTGGGATCCATTCCATCCATCAGAGAGAGCCAATAGACTCATTGTGCAGCAAATCCTGACAGGCACTCAGGAGTATATGCACCCAATGAACCTCAGCACCATTTTGGCTATGGACTCAAGGACCTGA 1182 45.94 MYYQIPINKEPFPLFHKAHCKLHFLSSFFDSPMESPSTLGLILLLIGSLVCQAQARAFFVFGDSLVDNGNNDYLLTTARADNYPYGIDYPTRRPTGRFSNGYNIPDLISQAIGSQSTLPYLSPQLRGQNLLVGANFASAGIGILNDTGIQFLNIIRITQQLEYFRQYQARVSALIGEEEARRLVNGALILITLGGNDFVNNYYLVPMSARSRQFALPDYVVYIISEYRKILARLYELGARRVLVTGTGPLGCVPAELAMRSRNGECSVELQRAAGLFNPQLVQIINSLNAEIGSEVFIAVNTQMMHMDFVSNPQAYGFVTSKVACCGQGPYNGIGLCTPASNLCPNRDLYAFWDPFHPSERANRLIVQQILTGTQEYMHPMNLSTILAMDSRT 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7420542 7426102 + Cp4.1LG07g08190.1 Cpe07g00820 472627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00820 393 SUPERFAMILY SGNH hydrolase 58 374 - -
Cpe07g00820 393 Pfam GDSL-like Lipase/Acylhydrolase 59 370 IPR001087 GO:0016788
Cpe07g00820 393 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 43 389 - -
Cpe07g00820 393 CDD SGNH_plant_lipase_like 57 373 IPR035669 -
Cpe07g00820 393 Gene3D SGNH hydrolase 49 376 IPR036514 -
Cpe07g00820 393 PANTHER GDSL ESTERASE/LIPASE LTL1 43 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00820 - - - bhj:120079371 657.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00820 Cpe-Chr7:7420542 Cpe18g00100 Cpe-Chr18:2578224 0 dispersed
Cpe18g00790 Cpe-Chr18:7453350 Cpe07g00820 Cpe-Chr7:7420542 1.10E-65 dispersed
Cpe07g00820 Cpe-Chr7:7420542 Cpe20g00486 Cpe-Chr20:2816016 3.70E-68 transposed
Cpe07g00820 Cpe-Chr7:7420542 Cpe04g00830 Cpe-Chr4:7735635 4.62E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g773 . . . . . . . . . . . . . . . Cpe07g00820 . . . . . . . . . . . . . . . . . Cone10ag0627 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001042 5 2 4 6 6 2 2 2 2 2 2 2 2 2 2 2 2 7 2 2 2 2 2 2 2 2 2 4 2 4 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00820 Cpe_Chr07 FPKM 3.547761 2.534183 0.734442 2.025815 5.28971 4.478347 4.582474 3.284134 4.02778 2.031612