Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00821 ATGGCCGACAAGGAGTCCTTGGAACTCCTCAAGAAAGATATCAAAGAGTTACTCCAAAGAATCGTTGATCAAGATGATTTTGAATGCTCAATCGCTGATGAGGCTATCGAGAAATTGAATTCTTTGAAACTCACCAAAATGGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTGCTGCTGCTGCTGCTCCGGTGGAATCTGGTGGGGATAGTGGCCGTAAGGCTCTGGTTATGCCGGATGAGTTCCGGTGCCCGATTTCTGGGGAGCTTATGGAAGACCCTGTTCTGTTGAAAACTGGTCAGACATATGATCGGCCCTTCATCAATAAATGGTTCAATAAAGGGCACAATACATGTCCTCGGACCAACGAAGTCCTTCACGACATGACGCTTACTCCGAATCGTAGTCTTCGGTCGATGATTTTGAAATGGTGCATAGATAACAAATTGGAGCTTCCAAAGCTTACTTATGAGGAAACAGTGGCACATGCCACTGAATCCCATTTGGATGAATTGCTTAACCAGTTGTTGTCTTCATCCCTTTCGGATCAAAAGCTAGCTGCAAAGGAGTTGAGACAGATAGCGAAATGGAACCATGAGTTTCGATCCCTTTTCGCGAAGCTCCCGGATTCGATCGAGAGACTATTGCATCCTATCTCGGTAGACCACGTTAATCTCCATCCTGATCTTCAAGAGGATTTGATTACCACTGTTCTTAATATCTCACTTAGTGGCGATAACAAGAAACGTCTCGTCGAGAACCAGTTGGTCCTCTCGTTGCTGATCCAATCCTTACAATACGGAAGTAGCGAGGCGAAGGCGAATGCAGCTGCAGCTATTTTCTCGCTATCTTTATATCAGGAGAATAAGATCGCCATTGGTAACGCGGGAGCTATCAAACATCTGGTTGGACTTTTAGACGAAGGCCATCCGGTAGTAATGAGAGATGCAGCTTCAGCAATTTTCACTCTCTGTACCGCAAGCGCGAACAAAGAGAAGGCAGTTTCGAGCGGAGTAGTTGTCTCCGTTCTTCGAAACATCACCGAAGGTGTATTGGTCGACGAGTTGGTTTCAGTACTTGCTCTTCTTTCGAACAATATGAAGGCTATCAGCATAATGTGCAAGCTGAACGCAGTGTCGTGTATGTTGAGAGTGATAAGGGAATCTACGTCCCAAGGCGTGAAAGAAAACTGCATATCGATACTGGACACGATCTCCTCGACTTATCGAAGCAAATTGAAGGAGATTCAGGAGGACGAGAATGCAAATGGTATGATCTCGAAACTTTCCCGAAACGGGAATTCGAGAGCAAAGAGGAAGGCTACGAGCGTACTCGAAAAGCTGCAAAGAGCTGGTTCAATTACTCACACTGCATAG 1374 46.65 MADKESLELLKKDIKELLQRIVDQDDFECSIADEAIEKLNSLKLTKMAAAAAAAAAAAAAAAPVESGGDSGRKALVMPDEFRCPISGELMEDPVLLKTGQTYDRPFINKWFNKGHNTCPRTNEVLHDMTLTPNRSLRSMILKWCIDNKLELPKLTYEETVAHATESHLDELLNQLLSSSLSDQKLAAKELRQIAKWNHEFRSLFAKLPDSIERLLHPISVDHVNLHPDLQEDLITTVLNISLSGDNKKRLVENQLVLSLLIQSLQYGSSEAKANAAAAIFSLSLYQENKIAIGNAGAIKHLVGLLDEGHPVVMRDAASAIFTLCTASANKEKAVSSGVVVSVLRNITEGVLVDELVSVLALLSNNMKAISIMCKLNAVSCMLRVIRESTSQGVKENCISILDTISSTYRSKLKEIQEDENANGMISKLSRNGNSRAKRKATSVLEKLQRAGSITHTA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7428581 7431862 + Cp4.1LG07g08180.1 Cpe07g00821 472628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00821 457 CDD RING-Ubox_PUB 81 123 IPR045210 -
Cpe07g00821 457 ProSiteProfiles U-box domain profile. 76 150 IPR003613 GO:0004842|GO:0016567
Cpe07g00821 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 338 IPR000225 GO:0005515
Cpe07g00821 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 7 455 - -
Cpe07g00821 457 SMART arm_5 365 406 IPR000225 GO:0005515
Cpe07g00821 457 SMART arm_5 243 284 IPR000225 GO:0005515
Cpe07g00821 457 SMART arm_5 285 325 IPR000225 GO:0005515
Cpe07g00821 457 Coils Coil 4 24 - -
Cpe07g00821 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 150 IPR013083 -
Cpe07g00821 457 Pfam Armadillo/beta-catenin-like repeat 286 324 IPR000225 GO:0005515
Cpe07g00821 457 SUPERFAMILY ARM repeat 167 447 IPR016024 -
Cpe07g00821 457 SMART Ubox_2 80 143 IPR003613 GO:0004842|GO:0016567
Cpe07g00821 457 PANTHER U BOX DOMAIN-CONTAINING 7 455 - -
Cpe07g00821 457 Pfam U-box domain 78 147 IPR003613 GO:0004842|GO:0016567
Cpe07g00821 457 Gene3D - 152 452 IPR011989 -
Cpe07g00821 457 SUPERFAMILY RING/U-box 70 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00821 - - - cpep:111799007 823.928
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00821 Cpe-Chr7:7428581 Cpe15g00150 Cpe-Chr15:1241927 2.66E-119 dispersed
Cpe07g00821 Cpe-Chr7:7428581 Cpe05g00133 Cpe-Chr5:680661 2.08E-123 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g727 . . . . . . . . . . . . . . . Cpe07g00821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002180 2 2 3 3 3 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 1 2 2 2 4 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00821 Cpe_Chr07 FPKM 3.077263 2.588636 0.0 0.0 0.0 0.0 0.0 0.351927 0.716107 0.823213