Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00830 ATGGAATCGGAAGACGAGCTGGACATGCACGATGCCCACGACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGAAGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTATGAGTTCGTCGATAATGATTCCGACGATTCCGATGATATGGTCTCCTACAGACACCAGCAAAACTATATAATCTTGGCTGAGGCGGACATACGGCAACGACAGGAGGAAGACATTATGAGAGTATCTACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTACATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCATATTAGAAAAACCAGTTTTGCCGCATTCAAATGCACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAACATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAACACTTGTTGGACAGGTTATATTAGGACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGGTGTCCAGATCCATCTTGTGGTGCCGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTCCCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGTCCTGCTCCAGGATGCGACTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACATGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACCGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCAAAATGGATCTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCCAAATGCAAACGACCTATCGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACTGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCGCTGGAGAGGTACACTCATTATTATGAAAGATGGGCCACGAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTACATCTGGAAAAGTTAAGTGACACTCAGTGCCAGCCTGAATCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCCGAGCGTGAACACGCCAAGAGACTGTTTTTTGAGTACTTACAAGGCGAGGCTGAGTCCGGGTTGGAACGACTCCACCAATGTGCTGAAAAGGAGTTGCAAGCTTACATAACTGCTGATGGTCCTTCAAGAGAATTTAACGAGTTCCGAACCAAACTTGCTGGATTAACCAGCTTTATTGGTAGAGATATCGATATTGTAATTGTTCTCATTATCGACTTTTCGATTGATTGCGATAACAGTGTAACTAGGAATTACTTCGAGAATTTAGTACGTGCTCTTGAGAATGGTCTATCAGATGTGGACTCCCAGGGTACCTGCAGCAGAACAGCAAGCTCGAAGAGCATCGGTGGCGGTAGGAGCAAAGGTGGGAAGGGCAAGATGAGTGCATTCCGTGGTAGCGGTTCGAGTCGAACCATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCAAATGTCAAGTCATTTACCATCTGCCAAATGTGCCAGCAACGGCGATAA 1863 44.39 MESEDELDMHDAHDDDDDDSVDNEEDFYSGGEDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGILEKPVLPHSNALELPCGICFEIYSRDNIQSAACGHPFCNTCWTGYIRTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYSRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRLFFEYLQGEAESGLERLHQCAEKELQAYITADGPSREFNEFRTKLAGLTSFIGRDIDIVIVLIIDFSIDCDNSVTRNYFENLVRALENGLSDVDSQGTCSRTASSKSIGGGRSKGGKGKMSAFRGSGSSRTIDDTDHWSCEHCTFANVKSFTICQMCQQRR 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7499261 7518137 - Cp4.1LG07g08320.1 Cpe07g00830 472637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00830 620 SUPERFAMILY RING/U-box 145 225 - -
Cpe07g00830 620 SMART ibrneu5 216 278 IPR002867 -
Cpe07g00830 620 SMART ibrneu5 282 352 IPR002867 -
Cpe07g00830 620 MobiDBLite consensus disorder prediction 1 57 - -
Cpe07g00830 620 Pfam Ariadne domain 365 487 IPR045840 -
Cpe07g00830 620 ProSitePatterns Zinc finger RanBP2-type signature. 597 616 IPR001876 -
Cpe07g00830 620 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 230 IPR013083 -
Cpe07g00830 620 SUPERFAMILY Ran binding protein zinc finger-like 593 620 IPR036443 -
Cpe07g00830 620 ProSiteProfiles Zinc finger RanBP2 type profile. 593 620 IPR001876 -
Cpe07g00830 620 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 527 IPR031127 GO:0004842|GO:0016567
Cpe07g00830 620 ProSiteProfiles TRIAD supradomain profile. 143 356 IPR044066 -
Cpe07g00830 620 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 527 - -
Cpe07g00830 620 Gene3D - 274 519 - -
Cpe07g00830 620 CDD RING-HC_RBR_TRIAD1_like 147 197 - -
Cpe07g00830 620 ProSiteProfiles Zinc finger RING-type profile. 147 191 IPR001841 -
Cpe07g00830 620 Pfam IBR domain, a half RING-finger domain 295 343 IPR002867 -
Cpe07g00830 620 Pfam IBR domain, a half RING-finger domain 216 278 IPR002867 -
Cpe07g00830 620 SUPERFAMILY RING/U-box 297 345 - -
Cpe07g00830 620 SMART zf_4 595 619 IPR001876 -
Cpe07g00830 620 MobiDBLite consensus disorder prediction 1 59 - -
Cpe07g00830 620 SUPERFAMILY RING/U-box 217 285 - -
Cpe07g00830 620 MobiDBLite consensus disorder prediction 556 588 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01240 Cpe-Chr5:8679852 Cpe07g00830 Cpe-Chr7:7499261 1.28E-54 dispersed
Cpe07g00830 Cpe-Chr7:7499261 Cpe12g00507 Cpe-Chr12:4972647 0 dispersed
Cpe07g00830 Cpe-Chr7:7499261 Cpe17g01099 Cpe-Chr17:8344123 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00830 K11968 - csv:101218052 1101.27