Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00830 ATGGAATCGGAAGACGAGCTGGACATGCACGATGCCCACGACGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGAAGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTATGAGTTCGTCGATAATGATTCCGACGATTCCGATGATATGGTCTCCTACAGACACCAGCAAAACTATATAATCTTGGCTGAGGCGGACATACGGCAACGACAGGAGGAAGACATTATGAGAGTATCTACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTACATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCATATTAGAAAAACCAGTTTTGCCGCATTCAAATGCACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAACATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAACACTTGTTGGACAGGTTATATTAGGACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGGTGTCCAGATCCATCTTGTGGTGCCGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTCCCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGTCCTGCTCCAGGATGCGACTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACATGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACCGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCAAAATGGATCTTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCCAAATGCAAACGACCTATCGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGTCTTGGTCCATGGTCTGATCATGGAGAGAGGACTGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGAGAGATGGCCAAGAATTCGCTGGAGAGGTACACTCATTATTATGAAAGATGGGCCACGAACCAATCGTCTAGGCAAAAGGCGCTTGCAGATCTCCATCAAATGCAAACCGTACATCTGGAAAAGTTAAGTGACACTCAGTGCCAGCCTGAATCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCCGAGCGTGAACACGCCAAGAGACTGTTTTTTGAGTACTTACAAGGCGAGGCTGAGTCCGGGTTGGAACGACTCCACCAATGTGCTGAAAAGGAGTTGCAAGCTTACATAACTGCTGATGGTCCTTCAAGAGAATTTAACGAGTTCCGAACCAAACTTGCTGGATTAACCAGCTTTATTGGTAGAGATATCGATATTGTAATTGTTCTCATTATCGACTTTTCGATTGATTGCGATAACAGTGTAACTAGGAATTACTTCGAGAATTTAGTACGTGCTCTTGAGAATGGTCTATCAGATGTGGACTCCCAGGGTACCTGCAGCAGAACAGCAAGCTCGAAGAGCATCGGTGGCGGTAGGAGCAAAGGTGGGAAGGGCAAGATGAGTGCATTCCGTGGTAGCGGTTCGAGTCGAACCATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCAAATGTCAAGTCATTTACCATCTGCCAAATGTGCCAGCAACGGCGATAA 1863 44.39 MESEDELDMHDAHDDDDDDSVDNEEDFYSGGEDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGILEKPVLPHSNALELPCGICFEIYSRDNIQSAACGHPFCNTCWTGYIRTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYSRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRLFFEYLQGEAESGLERLHQCAEKELQAYITADGPSREFNEFRTKLAGLTSFIGRDIDIVIVLIIDFSIDCDNSVTRNYFENLVRALENGLSDVDSQGTCSRTASSKSIGGGRSKGGKGKMSAFRGSGSSRTIDDTDHWSCEHCTFANVKSFTICQMCQQRR 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7499261 7518137 - Cp4.1LG07g08320.1 Cpe07g00830 472637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00830 620 SUPERFAMILY RING/U-box 145 225 - -
Cpe07g00830 620 SMART ibrneu5 216 278 IPR002867 -
Cpe07g00830 620 SMART ibrneu5 282 352 IPR002867 -
Cpe07g00830 620 MobiDBLite consensus disorder prediction 1 57 - -
Cpe07g00830 620 Pfam Ariadne domain 365 487 IPR045840 -
Cpe07g00830 620 ProSitePatterns Zinc finger RanBP2-type signature. 597 616 IPR001876 -
Cpe07g00830 620 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 230 IPR013083 -
Cpe07g00830 620 SUPERFAMILY Ran binding protein zinc finger-like 593 620 IPR036443 -
Cpe07g00830 620 ProSiteProfiles Zinc finger RanBP2 type profile. 593 620 IPR001876 -
Cpe07g00830 620 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 527 IPR031127 GO:0004842|GO:0016567
Cpe07g00830 620 ProSiteProfiles TRIAD supradomain profile. 143 356 IPR044066 -
Cpe07g00830 620 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 527 - -
Cpe07g00830 620 Gene3D - 274 519 - -
Cpe07g00830 620 CDD RING-HC_RBR_TRIAD1_like 147 197 - -
Cpe07g00830 620 ProSiteProfiles Zinc finger RING-type profile. 147 191 IPR001841 -
Cpe07g00830 620 Pfam IBR domain, a half RING-finger domain 295 343 IPR002867 -
Cpe07g00830 620 Pfam IBR domain, a half RING-finger domain 216 278 IPR002867 -
Cpe07g00830 620 SUPERFAMILY RING/U-box 297 345 - -
Cpe07g00830 620 SMART zf_4 595 619 IPR001876 -
Cpe07g00830 620 MobiDBLite consensus disorder prediction 1 59 - -
Cpe07g00830 620 SUPERFAMILY RING/U-box 217 285 - -
Cpe07g00830 620 MobiDBLite consensus disorder prediction 556 588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00830 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 1101.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01240 Cpe-Chr5:8679852 Cpe07g00830 Cpe-Chr7:7499261 1.28E-54 dispersed
Cpe07g00830 Cpe-Chr7:7499261 Cpe12g00507 Cpe-Chr12:4972647 0 dispersed
Cpe07g00830 Cpe-Chr7:7499261 Cpe17g01099 Cpe-Chr17:8344123 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01240 . 215 641 ARIADNE family AT4G34370 71.3 2.3e-182 635.6
Cpe16g00224 . 164 589 ARIADNE family AT4G34370 71.8 3.3e-181 631.7
Cpe05g01240 . 109 578 ARIADNE family AT2G16090 78.4 1.6e-224 775.8
Cpe16g00224 . 58 542 ARIADNE family AT2G16090 76.8 6.8e-223 770.4
Cpe16g00224 . 38 543 ARIADNE family AT3G27710 61.8 9.0e-184 640.6
Cpe05g01240 . 87 573 ARIADNE family AT3G27710 62.4 5.8e-183 637.9
Cpe05g01240 . 98 573 ARIADNE family AT3G27720 54.4 6.4e-144 508.1
Cpe16g00224 . 44 522 ARIADNE family AT3G27720 53.6 6.0e-142 501.5
Cpe07g00830 . 26 565 ARIADNE family AT1G05890 62.9 3.1e-217 751.9
Cpe17g01099 CST 56 563 ARIADNE family AT1G05890 68.1 3.3e-211 731.9
Cpe12g00507 CST 117 540 ARIADNE family AT1G05890 60.2 1.2e-160 563.9
Cpe07g00830 . 26 620 ARIADNE family AT1G65430 71.5 7.6e-258 886.7
Cpe17g01099 CST 16 622 ARIADNE family AT1G65430 65.4 7.9e-239 823.5
Cpe12g00507 CST 72 595 ARIADNE family AT1G65430 57.8 3.9e-185 645.2
Cpe07g00830 . 24 461 ARIADNE family AT2G31780 55.3 2.9e-148 522.3
Cpe17g01099 CST 53 488 ARIADNE family AT2G31780 53.3 3.9e-140 495.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00830 Cpe_Chr07 FPKM 7.846711 8.209621 7.722366 7.697589 10.844352 11.430383 10.685944 11.156168 11.91094 12.937625