Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00831 ATGGGTTCAATGAACTGGTTAGGCTTCTCCCTCTCCCCTCAAGAACAACACTCCGACCACCATCACGGCGGCGTCGGTGGCGGCGTCGACGGCGATGGTCCTTTCACCTCCGACAACATCTCCGGCTCCGCCGTCTGTTTTGACAATCTCCCCTCTTCCTACGGCGTCTATGAACCCTTCCACCGCAATAATCACTCTCAAGATTGGAACAATCTTAAGGGTTTAGGGTCAGCTCAAAGTTCGGATTTTTCTGCGTTAATCGAAACCCAACAGCCACCAAAGCTTGAAAATTTCCTCGGCCACCACTCTTTCACCGACCACGACCACGCCGTCGTCTACACCAATGCCTCCGGCAACTACATGTTCCAAAATTGTTCCTTGGAGCTTCCATCTGATCCGGCAAACTGCGGCGGCGGTGGAAAAACCAACGATAACGCCAATAACAACGGTAGCTCTATTGGGTTGTCTATGATGAAGACGTGGTTAAGAAATCAACCTGCGCCGCCGCAAGCGGTGGCGAAGTATGGCGGAGATCACGACGGTGCGGTTAGATCAGGTAATATCACAAACGCACATAGTTTATCGCTGTCGATGAATACTGGACCACCGGCGGCGGCTCTGCCACTTTTGACGGCAAACGGTGGCGGAAGTGGCGGCGAAAGCTCCTCCTCCGATAACAAACAAGCTAAATCAGCCTCTGCGGAAGTGGACGGTGAAAACGGCGCCGTTGAAGCTGTACCTAGAAAATCTATTGACACATTCGGCCAAAGAACTTCCATATACCGTGGTGTAACCAGACGAGAAGGACAAACAAGAAAAGGAAGACAAGGTGGCTATGACAAAGAAGAAAAGGCTGCAAGAGCCTATGATTTAGCAGCTCTTAAATATTGGGGCTCCACCACCACCACCAATTTTCCAATTAGTGATTATGAGAAAGAAATGGAAGATATGAAGCATATGACAAGGCAAGAATTTGTAGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGTGGAGCTTCCATTTATCGTGGCGTAACGAGATGGCAAGCGAGAATAGGGCGAGTTGCTGGGAACAAAGATCTCTACTTGGGAACTTTCAGTACGCAAGAGGAAGCAGCAGAAGCATATGACACGGCGGCGATAAAGTTCCGGGGACTAAATGCGGTGACCAACTTTGATATGAGTCGTTATGACGTTAAAGCCATTCTCGAAAGCAATACATTACCTATCGGTGGTGCTGCGAAGCGTTTAAAAGATATTGTTCACTCTGATATTGATCCACAACGAAGCGACGAGAACATAACTTCACATCTCTCCGATGGAATAATCACCGCTGCTGCCGCCCCTTACGGTGGCGGCGGATGGCCAAGTCTTGCCTTCCACCACCATCCGTACGCCTTCCACTACCCGTACGCCGCCACACAGCAACGACTATGGTGCAAGCAAGAGCACGACGCCACCGTCGCTGCTGCAGACAACTTCTTCCCACACGGCGGAGCCATGGACTCAATGGATCATGGGGTTTACAGCGGTGGCGGAAGCGGAGACGGGTACGGCGGGAACTTTCTGATTTCGATGGCGGCGACGGGGGCGGAAGCTGGGAGCAGCAGCAGCAACAACAATGGTGGTGGGTTGGGAGAAATTGGAGAAGTGAATTTGTTTGGATGTTCTTCTAACGTGGATGATCCATACCATGCAACAAGAACCACCACCAATTTGTACGATTATAACAATTCCTCTCATCAGCTGCCACCGCCCACGACGGCGCTACAGCAATGCAACAACTGGCTTCCACCAGCCAGGACGGTTTGTCACGGCGGAGCTCCGCCGCCTTTCACCATATGGAATGACACTTAA 1860 51.08 MGSMNWLGFSLSPQEQHSDHHHGGVGGGVDGDGPFTSDNISGSAVCFDNLPSSYGVYEPFHRNNHSQDWNNLKGLGSAQSSDFSALIETQQPPKLENFLGHHSFTDHDHAVVYTNASGNYMFQNCSLELPSDPANCGGGGKTNDNANNNGSSIGLSMMKTWLRNQPAPPQAVAKYGGDHDGAVRSGNITNAHSLSLSMNTGPPAAALPLLTANGGGSGGESSSSDNKQAKSASAEVDGENGAVEAVPRKSIDTFGQRTSIYRGVTRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGSTTTTNFPISDYEKEMEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDTAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIVHSDIDPQRSDENITSHLSDGIITAAAAPYGGGGWPSLAFHHHPYAFHYPYAATQQRLWCKQEHDATVAAADNFFPHGGAMDSMDHGVYSGGGSGDGYGGNFLISMAATGAEAGSSSSNNNGGGLGEIGEVNLFGCSSNVDDPYHATRTTTNLYDYNNSSHQLPPPTTALQQCNNWLPPARTVCHGGAPPPFTIWNDT 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7531542 7535568 + Cp4.1LG07g08280.1 Cpe07g00831 472638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00831 619 SUPERFAMILY DNA-binding domain 341 396 IPR016177 GO:0003677
Cpe07g00831 619 SUPERFAMILY DNA-binding domain 259 308 IPR016177 GO:0003677
Cpe07g00831 619 PRINTS Ethylene responsive element binding protein signature 376 396 IPR001471 GO:0003700|GO:0006355
Cpe07g00831 619 PRINTS Ethylene responsive element binding protein signature 261 272 IPR001471 GO:0003700|GO:0006355
Cpe07g00831 619 PANTHER BNAC02G44180D PROTEIN 5 495 - -
Cpe07g00831 619 ProSiteProfiles AP2/ERF domain profile. 260 306 IPR001471 GO:0003700|GO:0006355
Cpe07g00831 619 MobiDBLite consensus disorder prediction 9 34 - -
Cpe07g00831 619 MobiDBLite consensus disorder prediction 215 233 - -
Cpe07g00831 619 ProSiteProfiles AP2/ERF domain profile. 336 394 IPR001471 GO:0003700|GO:0006355
Cpe07g00831 619 CDD AP2 259 308 IPR001471 GO:0003700|GO:0006355
Cpe07g00831 619 SMART rav1_2 260 312 IPR001471 GO:0003700|GO:0006355
Cpe07g00831 619 SMART rav1_2 342 400 IPR001471 GO:0003700|GO:0006355
Cpe07g00831 619 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 495 - -
Cpe07g00831 619 MobiDBLite consensus disorder prediction 207 242 - -
Cpe07g00831 619 CDD AP2 341 396 IPR001471 GO:0003700|GO:0006355
Cpe07g00831 619 Gene3D AP2/ERF domain 338 396 IPR036955 GO:0003700|GO:0006355
Cpe07g00831 619 Gene3D AP2/ERF domain 259 308 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01307 Cpe-Chr4:10746802 Cpe07g00831 Cpe-Chr7:7531542 1.04E-63 dispersed
Cpe07g00831 Cpe-Chr7:7531542 Cpe11g00728 Cpe-Chr11:5567673 0 dispersed
Cpe17g01117 Cpe-Chr17:8467733 Cpe07g00831 Cpe-Chr7:7531542 1.45E-06 dispersed
Cpe07g00831 Cpe-Chr7:7531542 Cpe02g01743 Cpe-Chr2:14248478 1.22E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49780 PF00847 AP2 4.10E-05 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00831 K09285 - csv:101219473 890.182