Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe07g00838 | ATGGCTTTTCTGGAGGTAAAACAGAAACTCTTACGCGAGATCGAATCTTTAGGATTCTCGAGGGCCCGAGCAGCCCGAGCACTTCATGTTACTGGAAATGCCAGCTTTGAAGATGCGATGGATTGGATCGTTCATCACGAGAACGATCCGGATATTGATCAAGTGCCCCTGGTAGCAATAGAGATCGATATCGAATCTCCCGAACCATTTCATATCACAGAGGAAACGAAAAAGAAAGCTAATGAATTAAGGGATCAAATACTGAAAGAAAAGAAAAAGGAAGAAAAAGAGTTAGAAAAACGAAGGGAAAAGGATCGAATTCGTTCGGGGAAAGAACTGCAAGAAGCGAAACGAATGGCAGAAGGAACTGAATGGAAACGCTATAAAGATTCTAGACAAGCTGAGATACAGGAGGAGAAAAAAGCAAGAGAAAAGGTTTTACAAACACTAGAACAGAACAAGATAGAAAGAAAAAGGGATCTTGGATTGCCCTCTGAAGTAACTAGAAGCATTGCTGCTAAAGCCATCACAATTGGAGCACAGGAAAAGTATGAACATAAATCACAAAATTCAGGCTCTATGAGAGAATGTTTAAGGTCTCTTAGGCACCATCAAAAGGATGATCCTGAAAAAGTGAGAAATGCCTTCCAAACTCTCTTCACTTATGTTAGAAATGTAGCAAGAAATCCTGATGAGGAACGGATTCGGAAGATTCCGCTCGGTAATCCTTTGTTCCAGGAAAGAGTTGGGTGTTTGAAAGAAGGGATCGAGTTTCTCGAACTTTGTGGCTTTCAGAGAGACGGAGACTTTCTCTACCTTCCTCGTGGCAAGGTCGATCGGGACGTTTTAGTCACGGCTGGATTGTTATTGGAATCTGCAATGACAAATCCCTTTTTTGGTATTCTATGA | 909 | 41.58 | MAFLEVKQKLLREIESLGFSRARAARALHVTGNASFEDAMDWIVHHENDPDIDQVPLVAIEIDIESPEPFHITEETKKKANELRDQILKEKKKEEKELEKRREKDRIRSGKELQEAKRMAEGTEWKRYKDSRQAEIQEEKKAREKVLQTLEQNKIERKRDLGLPSEVTRSIAAKAITIGAQEKYEHKSQNSGSMRECLRSLRHHQKDDPEKVRNAFQTLFTYVRNVARNPDEERIRKIPLGNPLFQERVGCLKEGIEFLELCGFQRDGDFLYLPRGKVDRDVLVTAGLLLESAMTNPFFGIL | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7602638 | 7609660 | + | Cp4.1LG07g08360.1 | Cpe07g00838 | 472645 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe07g00838 | 302 | Pfam | UBA/TS-N domain | 11 | 43 | IPR015940 | - | |
| Cpe07g00838 | 302 | Coils | Coil | 73 | 108 | - | - | |
| Cpe07g00838 | 302 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Cpe07g00838 | 302 | SUPERFAMILY | PUG domain-like | 201 | 298 | IPR036339 | - | |
| Cpe07g00838 | 302 | PANTHER | F13M7.16 PROTEIN | 1 | 302 | - | - | |
| Cpe07g00838 | 302 | Gene3D | - | 8 | 53 | - | - | |
| Cpe07g00838 | 302 | PANTHER | UBX DOMAIN-CONTAINING PROTEIN 1-LIKE | 1 | 302 | - | - | |
| Cpe07g00838 | 302 | MobiDBLite | consensus disorder prediction | 94 | 124 | - | - | |
| Cpe07g00838 | 302 | SMART | PGNneu | 214 | 275 | - | - | |
| Cpe07g00838 | 302 | Gene3D | - | 197 | 287 | - | - | |
| Cpe07g00838 | 302 | SUPERFAMILY | UBA-like | 5 | 56 | IPR009060 | GO:0005515 | |
| Cpe07g00838 | 302 | Coils | Coil | 133 | 156 | - | - | |
| Cpe07g00838 | 302 | Pfam | PUB domain | 210 | 280 | IPR018997 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe07g00838 | Cpe-Chr7:7602638 | Cpe17g00305 | Cpe-Chr17:2068622 | 2.54E-89 | dispersed | |
| Cpe11g00595 | Cpe-Chr11:3562436 | Cpe07g00838 | Cpe-Chr7:7602638 | 3.94E-145 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe07g00838 | - | K24348 | cpep:111798008 | 578.556 |