Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00844 ATGGGGATTTTGTTTACTCGAATGTTTTCTTCGGTGTTTGGGAATAAGGAAGCTCGGATCCTTGTTCTTGGCCTTGATAATGCTGGGAAAACTACCATTCTCTATCGGCTCCAGATGGGGGAGGTTGTCTCCACAATTCCAACTACTGTTCAAATATCTTTTAAACGATATCCTTTTCTTGATGCAGCAATTGGATTTAATGTTGAAACTGTGCAGTACAATAACATCAAATTCCAGGTCTGGGATCTTGGAGGACAGACTAGTATCAGACCATACTGGAGATGCTATTTTCCTAATACGCAAGCTATAATCTATGTGGTTGATTCAAGTGATACTGATAGGCTGGTGATAGCAAAAGAGGAGTTTCATGCAATACTTGAGGAAGAAGAGTTGCGGGGTGCAGTTGCCTTAGTTTTTGCGAATAAGCAGGATCTTCCGGGTGCACTTGATGATGCAGCAGTCACAGAAGCCTTAGAGTTGCACAAGATTAAGAACCGTCAATGGGCTATATTTAAAGCCTCTGCTATAAAAGGAGAAGGTCTTTTTGAGGGATTGGATTGGTTAAGTAACACACTCAAGTCTGGAGGTGGCTAA 594 41.75 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTTVQISFKRYPFLDAAIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELRGAVALVFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKASAIKGEGLFEGLDWLSNTLKSGGG 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7654784 7660409 + Cp4.1LG07g08370.1 Cpe07g00844 472651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00844 197 SMART sar_sub_1 1 192 IPR006689 GO:0003924|GO:0005525
Cpe07g00844 197 Gene3D - 5 195 IPR027417 -
Cpe07g00844 197 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 197 IPR024156 GO:0005525
Cpe07g00844 197 ProSiteProfiles small GTPase Arf family profile. 11 192 - -
Cpe07g00844 197 TIGRFAM small_GTP: small GTP-binding protein domain 16 181 IPR005225 GO:0005525
Cpe07g00844 197 Pfam ADP-ribosylation factor family 5 191 IPR006689 GO:0003924|GO:0005525
Cpe07g00844 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 193 IPR027417 -
Cpe07g00844 197 SMART arf_sub_2 1 196 - -
Cpe07g00844 197 CDD Arl1 19 191 - -
Cpe07g00844 197 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Cpe07g00844 197 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Cpe07g00844 197 PANTHER ADP-RIBOSYLATION FACTOR 1 1 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00844 Cpe11g00600 CST
Cpe07g00844 Cpe11g00862 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01478 Cpe-Chr3:11706917 Cpe07g00844 Cpe-Chr7:7654784 2.41E-58 dispersed
Cpe05g00714 Cpe-Chr5:4383757 Cpe07g00844 Cpe-Chr7:7654784 5.08E-39 dispersed
Cpe07g00844 Cpe-Chr7:7654784 Cpe08g00297 Cpe-Chr8:1897072 1.01E-55 dispersed
Cpe12g00312 Cpe-Chr12:2065409 Cpe07g00844 Cpe-Chr7:7654784 7.40E-25 dispersed
Cpe17g00728 Cpe-Chr17:5781636 Cpe07g00844 Cpe-Chr7:7654784 9.65E-17 dispersed
Cpe19g00808 Cpe-Chr19:6066328 Cpe07g00844 Cpe-Chr7:7654784 3.55E-47 transposed
Cpe11g00600 Cpe-Chr11:3592195 Cpe07g00844 Cpe-Chr7:7654784 1.80E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00844 K07942 - csv:101209396 347.821