Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00857 ATGGAAGAGTTTTACAGGCTCAACAGCTCTGTTATATCCTCATACACTAATGGAGTCGTAGCTAGTGAGGCCATTGCAAGCACTAGCTGTGGTGGAGTTCATGGAGCTCAAATGATGAACAATGAAATGATTCAGCTGGAAGCTGAGACCACTACTGGCTTGAACATGTCTGAAATCATCAAAACTCAAATTGTCAACCATCCCCTTTATTGCAAACTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTGTCTTCTTGAAGAAATTGGTCGTGAAAATCACCCTCCTAGGTCATGTATTGAGCTGGGAGCTGATCCTCAACTCGACAACTTCATGGAGTCATACTGTGAAGTTCTTCATCAATACAAGAATGAGCTAACCAAGCCATTTAATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTATGTAAAGGATCATTTACAGCAACGTCGGATTCTCGTCCCGCCACGAACGACGAAGTAGCCGAGACGCCGGAGGACGAACCGGGCAGCTACCGGGAAGTCGAGATGCCGGGAAATCACGAGCCATTCGGCACGAGGCAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTAAGCAGTTTGAAGAAGGATTTCCTTAAAAAAAGGAAGAAAGAGAAGCTTCCAAAGGATGCAAGAATGGCTTTATTTGATTGGTGGAACACTCATTACAAATGGCCATATCCCACAGAAGAGGAAAAATCAAAACTTTCTGGTATTACTGGTTTGGATCAGAAGCAGATCAATAACTGGTTCATTAACCAGCGAAAACGGCATTGGAATCCGCCCGAAGAAATGCGATTCGCGCTCATGGACAGTGTCGGGACCGGGGTCGGGGAATGCATCAAAGGTTCAAATTTTTATGACAATGGAGGAACAGGAGGCCGTGTTGTTTAG 972 44.65 MEEFYRLNSSVISSYTNGVVASEAIASTSCGGVHGAQMMNNEMIQLEAETTTGLNMSEIIKTQIVNHPLYCKLVSAYIECQKVGAPPQVACLLEEIGRENHPPRSCIELGADPQLDNFMESYCEVLHQYKNELTKPFNEATMFLTNIELELSNLCKGSFTATSDSRPATNDEVAETPEDEPGSYREVEMPGNHEPFGTRQTNQDLKEMLLKKYSGYLSSLKKDFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSGITGLDQKQINNWFINQRKRHWNPPEEMRFALMDSVGTGVGECIKGSNFYDNGGTGGRVV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7771796 7774727 + Cp4.1LG07g08480.1 Cpe07g00857 472664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00857 323 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 298 - -
Cpe07g00857 323 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Cpe07g00857 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 298 - -
Cpe07g00857 323 CDD homeodomain 236 287 IPR001356 GO:0003677
Cpe07g00857 323 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Cpe07g00857 323 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Cpe07g00857 323 SMART ELK_2 204 225 IPR005539 GO:0003677
Cpe07g00857 323 SMART HOX_1 226 291 IPR001356 GO:0003677
Cpe07g00857 323 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Cpe07g00857 323 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Cpe07g00857 323 Gene3D - 222 294 - -
Cpe07g00857 323 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Cpe07g00857 323 MobiDBLite consensus disorder prediction 161 199 - -
Cpe07g00857 323 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Cpe07g00857 323 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Cpe07g00857 323 Pfam ELK domain 204 225 IPR005539 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00857 Cpe11g00875 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00857 Cpe-Chr7:7771796 Cpe09g00513 Cpe-Chr9:3419266 4.70E-78 dispersed
Cpe13g00185 Cpe-Chr13:1447129 Cpe07g00857 Cpe-Chr7:7771796 5.44E-13 dispersed
Cpe11g00875 Cpe-Chr11:7100812 Cpe07g00857 Cpe-Chr7:7771796 6.30E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49781 PF03791 KNOX2 2.70E-21 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00857 - - cmos:111443969 611.683