Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe07g00861 | ATGTGTTGCGACGGCGAAGGGCTCCTTTTGGTCCAAAAGGTCTCAGAACTTTACCACAAAATCTCCACTCTCCAAAGCCTCCAACCCTCCAAACATGTCAACTCCCTCTTCTCTCAGCTCGTCCTCACCTGCACCCCTCCGCCGCCTCCTCCTCCGTCTCCGCCGCTCATCGACGTCTCGAACCTCAGCTCCACCGTCCAAACCATGAGATCCCATCTCATCAAGCTCTGCGGCCAAGCCGAGGGCTTACTCGAGCACCATTACTCGACCATCTTAGCCTCCCACCAGAACCCTCTTGACCATCTCTCCCTTTTCCCTTACTACTCCAACTACCTCAAACTAACCCATCTCGAATTCTCCATTCTCACCCGTTACATATCATCCTCTCCACCGTCCAAAGTGGCATTCATTGGCTCTGGTGCTCTCCCGTTCTCGTCCATCATCATGGCTTTGAAATACCTCCCAACGACCGAGTTTCACAACTTTGATGTCGACTCATCCGCTAATGCCAAGGCTATGGCACTCGTGGCAAGCGACGTGGACTTGTCGAAGCGGATGTTGTTCCACACTACTGATATCATGGACGTCACCTCGAACATGTTGAGAGAGTTCGAGGTGGTTTTTTTGGCAGCGTTGGTGGGAATGGAGAAAGAGGAGAAAGTTAAGGTAATCGAGCATTTACGTAAGAACATGACTAGTGGCTCGTTGTTGATGTTGAGAAGCGCGTATGGTGCACGTGCGTTTCTTTATCCAGTGGTGGAAGCTTCTGATCTTCGAGGGTTTGAGATTCTTACAACGTTTCATCCTACTGATGATGTTGTCAATTCGATCGTGTTGGCTCGATTATAA | 849 | 50.29 | MCCDGEGLLLVQKVSELYHKISTLQSLQPSKHVNSLFSQLVLTCTPPPPPPPSPPLIDVSNLSSTVQTMRSHLIKLCGQAEGLLEHHYSTILASHQNPLDHLSLFPYYSNYLKLTHLEFSILTRYISSSPPSKVAFIGSGALPFSSIIMALKYLPTTEFHNFDVDSSANAKAMALVASDVDLSKRMLFHTTDIMDVTSNMLREFEVVFLAALVGMEKEEKVKVIEHLRKNMTSGSLLMLRSAYGARAFLYPVVEASDLRGFEILTTFHPTDDVVNSIVLARL | 282 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7787265 | 7788113 | - | Cp4.1LG07g08660.1 | Cpe07g00861 | 472668 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe07g00861 | 282 | PANTHER | SYNTHASE, PUTATIVE-RELATED | 3 | 281 | - | - | |
| Cpe07g00861 | 282 | ProSiteProfiles | Nicotianamine synthase (NAS)-like family profile. | 2 | 282 | IPR004298 | GO:0030410|GO:0030418 | |
| Cpe07g00861 | 282 | Gene3D | Vaccinia Virus protein VP39 | 56 | 282 | IPR029063 | - | |
| Cpe07g00861 | 282 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 46 | 226 | - | - | |
| Cpe07g00861 | 282 | Pfam | Nicotianamine synthase protein | 9 | 281 | IPR004298 | GO:0030410|GO:0030418 | |
| Cpe07g00861 | 282 | PANTHER | NICOTIANAMINE SYNTHASE 3 | 3 | 281 | IPR004298 | GO:0030410|GO:0030418 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g00225 | Cpe07g00861 | CCT | |
| Cpe07g00861 | Cpe11g00876 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g00225 | Cpe-Chr4:2724894 | Cpe07g00861 | Cpe-Chr7:7787265 | 2.29E-109 | dispersed | |
| Cpe07g00861 | Cpe-Chr7:7787265 | Cpe18g00614 | Cpe-Chr18:6427881 | 5.07E-91 | dispersed | |
| Cpe11g00876 | Cpe-Chr11:7106470 | Cpe07g00861 | Cpe-Chr7:7787265 | 4.74E-107 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe07g00861 | K05953 | - | csv:101219339 | 436.417 |