Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00878 ATGGCGTCGAGGAATCGGACTTTGGTTTTTAGGAAATACAGGGACGCGTTAAGGAGTGTGAGGGCTCCTACCAGCTCTTCGCCTGCTTGTCCGTCGCCATCGACTAGTTCTGGCGCTGGTGGACCGGTAATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACCGAGGATCCGGGTAATTCAAGTAAGGGCGCTCTCACTGTGGGTCTACCTCCGTCTTGGGTCGATGTATCCGAAGAGATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAAGCTCATGGAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACAGCTAATCGAGTCTCTAACGCAAGACATAACTAATTTAATCAAGAAATCAGAGAAGGGACTCAGGAGATTCTCTGTGGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAACGTTCAGCGATCCCTTGCCACTGACCTTCAGAACCTTTCCATGGAGCTTCGGAAGAAACAATCAACTTATTTGAAGCGCCTACGACAGCAAAAAGAGGAAGTTCAAGATGGGATTGACATAGAGATGAATCAAAATGGAAATAGATCAAGAATGGAGGACGATGATTTAGAAGACATGGAATTCAATGAGCATCAGATGGCTAAGGTGCGAAAAAATGAAGCATTCACTGCCGAAAGAGAGAAGGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCAGTTCTTGTCATAGACCAGGGCACTATTATCGATAGGATAGATTATAATATTCAAAATGTTGCAACGACAGTTGATGAGGGCCTTAAGCAACTCGAGAAGGCGGAGAGAACACAGAAAAAAGGCGGGATGGTAATGTGCGCAAGCGTTCTCATTATCATGTGCTTTGTCATGTTGGTCCTCTTGATCCTTAAAACCATACTATTTTGA 990 44.85 MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSGAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPSWVDVSEEIAANVQRARVKMVELAKAHGKALMPSFGDGKEDQQLIESLTQDITNLIKKSEKGLRRFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDIEMNQNGNRSRMEDDDLEDMEFNEHQMAKVRKNEAFTAEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLEKAERTQKKGGMVMCASVLIIMCFVMLVLLILKTILF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7899543 7904049 - Cp4.1LG07g08840.1 Cpe07g00878 472685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00878 329 PANTHER SYNTAXIN-43-LIKE 1 324 - -
Cpe07g00878 329 SMART SynN_4 73 188 IPR006011 GO:0016020
Cpe07g00878 329 MobiDBLite consensus disorder prediction 20 42 - -
Cpe07g00878 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020|GO:0016192
Cpe07g00878 329 Coils Coil 184 204 - -
Cpe07g00878 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Cpe07g00878 329 Pfam SNARE domain 269 321 IPR000727 -
Cpe07g00878 329 PANTHER SYNTAXIN 1 324 IPR045242 -
Cpe07g00878 329 CDD SNARE_syntaxin16 237 294 - -
Cpe07g00878 329 SMART tSNARE_6 228 295 IPR000727 -
Cpe07g00878 329 Gene3D - 79 287 - -
Cpe07g00878 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00878 Cpe11g00890 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00878 Cpe-Chr7:7899543 Cpe12g00911 Cpe-Chr12:7883999 2.15E-115 dispersed
Cpe11g00890 Cpe-Chr11:7181930 Cpe07g00878 Cpe-Chr7:7899543 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00878 K08489 - csv:101207998 563.533